Detailed information    

insolico Bioinformatically predicted

Overview

Name   comA   Type   Machinery gene
Locus tag   QCL65_RS18915 Genome accession   NZ_CP124218
Coordinates   4112353..4114587 (-) Length   744 a.a.
NCBI ID   WP_407311434.1    Uniprot ID   -
Organism   Pseudomonas sp. nanlin1     
Function   ssDNA transport through the inner membrane (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 4107353..4119587
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QCL65_RS18880 (QCL65_18735) murB 4107734..4108753 (-) 1020 WP_407311420.1 UDP-N-acetylmuramate dehydrogenase -
  QCL65_RS18885 (QCL65_18740) - 4108750..4109214 (-) 465 WP_407311422.1 low molecular weight protein-tyrosine-phosphatase -
  QCL65_RS18890 (QCL65_18745) kdsB 4109214..4109978 (-) 765 WP_407311424.1 3-deoxy-manno-octulosonate cytidylyltransferase -
  QCL65_RS18895 (QCL65_18750) - 4109975..4110160 (-) 186 WP_407311426.1 Trm112 family protein -
  QCL65_RS18900 (QCL65_18755) lpxK 4110197..4111207 (-) 1011 WP_407311428.1 tetraacyldisaccharide 4'-kinase -
  QCL65_RS18905 (QCL65_18760) - 4111207..4111635 (-) 429 WP_407311430.1 ExbD/TolR family protein -
  QCL65_RS18910 (QCL65_18765) exbB 4111632..4112267 (-) 636 WP_407311432.1 MotA/TolQ/ExbB proton channel family protein Machinery gene
  QCL65_RS18915 (QCL65_18770) comA 4112353..4114587 (-) 2235 WP_407311434.1 ComEC/Rec2 family competence protein Machinery gene
  QCL65_RS18920 (QCL65_18775) - 4114737..4115258 (+) 522 WP_407311436.1 DUF2062 domain-containing protein -
  QCL65_RS18925 (QCL65_18780) - 4115282..4116061 (-) 780 WP_407311438.1 ABC transporter permease -
  QCL65_RS18930 (QCL65_18785) - 4116058..4116990 (-) 933 WP_407311440.1 ABC transporter ATP-binding protein -

Sequence

Protein


Download         Length: 744 a.a.        Molecular weight: 80433.08 Da        Isoelectric Point: 11.3597

>NTDB_id=823946 QCL65_RS18915 WP_407311434.1 4112353..4114587(-) (comA) [Pseudomonas sp. nanlin1]
MRTGMLALGLGLLAPAFLPSLPPAWALLGVAAGALLGLCLRTYRVSALLLGVAWACASAQWALDDRLSAQLDGRTFWLEG
QVSGLPDRSGSSVRFELRDIQARQHQLPTRLRLSWFNGPAVREGERWRLAVRLKRPRGLVNPGGFDHEQWLLSHRIGATG
SVKDGHLLVPARHAWRDDLRERLSRVDAWGREGALRALVLGDGQGVSSADWAILQATGTVHLLVISGQHIGLVGALVYGL
VAGLARLGLWPRRWPWLPWACALAMLAALGYGALAGFQVPVQRACLMLALVLVWRLRYRHLGLLLPLLLVFDAVLLIEPL
VSLQPGFWLSFGAVAVLMLIFRGRLGAWRPWRAWGRAQFLIALGLLPMLLALGLPISLSGPLVNLVAVPWVSVGILPLAL
AGTLLLPWPGVGSALLWLAGGSLEALFMFLQWAAQLAPAWTPPLVPGWLAALVGLGAFLVLLPAGSPLRPLGWPLLLLVV
WPGGERIAWGQAQIWQLDVGQGLAVIVRTRGHTLVYDTGPRTPGFDSGERVLVPTLRKLGVGQVDSLLISHAHLDHAGGA
PALMRSFPAAQVLAGEPAGLPKAWRAQACRPGASWVWDGVTFTVWRWLQARESNPASCVLLVEASGERLLLTGDIDSAAE
RALLDSGLDVAADWLQAPHHGSRTSSSQRFVDAVAPRGVMIPRGQGNSFGHPHISVVERYRQAGASLHDNAIDGALQLTL
GRFSGPTAWRSQRRFWRDDHVPAP

Nucleotide


Download         Length: 2235 bp        

>NTDB_id=823946 QCL65_RS18915 WP_407311434.1 4112353..4114587(-) (comA) [Pseudomonas sp. nanlin1]
ATGCGAACAGGGATGCTCGCGTTGGGCTTGGGGCTGCTCGCGCCGGCGTTTTTGCCGAGCTTGCCGCCTGCCTGGGCGCT
ATTGGGGGTGGCGGCGGGCGCGCTGTTGGGTTTGTGCCTGCGTACGTACCGCGTGAGTGCGTTGCTGCTGGGCGTAGCCT
GGGCCTGCGCCTCGGCGCAGTGGGCGTTGGATGACCGCTTGTCGGCGCAGCTCGACGGCCGCACGTTTTGGTTGGAAGGG
CAAGTCAGCGGCCTACCCGATAGATCCGGCAGTTCTGTGCGCTTCGAGTTGCGTGACATCCAAGCCCGTCAGCACCAGCT
GCCGACTCGCCTGCGGCTGTCATGGTTCAACGGCCCGGCGGTGCGCGAAGGCGAGCGCTGGCGTTTGGCGGTGCGCCTGA
AACGCCCGCGGGGGCTGGTCAACCCGGGCGGCTTCGATCATGAGCAGTGGCTGCTCAGCCACCGCATAGGCGCCACGGGC
AGTGTCAAAGACGGCCATTTGCTTGTTCCTGCCCGGCACGCTTGGCGCGACGATCTGCGCGAGCGGCTTTCGCGGGTTGA
TGCCTGGGGCCGTGAAGGCGCCTTGCGTGCGTTGGTACTCGGCGATGGGCAAGGTGTCAGCAGCGCCGATTGGGCCATTT
TGCAAGCCACCGGCACGGTGCATTTGCTAGTGATCTCAGGGCAACATATCGGTCTGGTCGGCGCGCTGGTCTACGGCCTG
GTAGCTGGCCTGGCGCGCCTGGGGTTATGGCCGCGCCGCTGGCCCTGGCTGCCGTGGGCCTGCGCCTTGGCAATGCTGGC
CGCCCTGGGCTACGGCGCCCTGGCCGGTTTCCAGGTGCCCGTGCAGCGTGCCTGCCTGATGCTCGCGCTGGTGCTGGTCT
GGCGCCTGCGCTACCGCCACTTGGGGCTATTGCTGCCGCTGCTGCTGGTGTTTGATGCGGTGCTGTTGATCGAGCCGCTG
GTCAGCCTGCAACCCGGCTTCTGGTTGTCATTCGGTGCGGTCGCAGTGCTTATGCTGATCTTTCGCGGCCGCCTGGGCGC
CTGGCGGCCTTGGCGGGCTTGGGGGCGTGCGCAGTTTCTGATCGCCCTAGGGCTGTTGCCGATGTTGTTGGCGTTAGGTC
TGCCGATCAGCCTGAGCGGGCCGCTGGTCAACCTGGTGGCGGTGCCATGGGTCAGTGTCGGTATTTTGCCCCTGGCGTTG
GCTGGCACCCTACTGCTGCCCTGGCCTGGGGTGGGTAGCGCGTTGTTATGGCTGGCCGGGGGATCGCTGGAAGCGTTGTT
TATGTTTCTGCAGTGGGCCGCGCAACTCGCGCCTGCCTGGACACCGCCATTGGTCCCCGGCTGGCTGGCCGCGTTGGTGG
GGCTCGGCGCTTTCCTGGTGCTGTTGCCCGCCGGCAGCCCATTGCGGCCGCTGGGCTGGCCGTTGTTGCTATTGGTGGTA
TGGCCCGGCGGCGAGCGCATAGCGTGGGGGCAGGCGCAGATCTGGCAATTGGATGTTGGGCAAGGCCTTGCCGTTATCGT
GCGCACGCGCGGACATACCCTGGTCTACGACACCGGCCCGCGCACCCCAGGTTTCGACAGCGGCGAGCGGGTTCTGGTGC
CGACCCTGCGCAAGCTTGGCGTGGGCCAGGTGGACAGCCTGCTGATCAGCCACGCCCACCTCGACCACGCCGGCGGAGCG
CCGGCCTTGATGCGTAGCTTCCCCGCCGCGCAGGTGCTGGCCGGTGAGCCCGCCGGCTTGCCCAAAGCCTGGCGCGCCCA
AGCCTGTCGCCCAGGCGCCAGTTGGGTTTGGGACGGCGTGACCTTTACCGTATGGCGCTGGCTGCAGGCCCGCGAGAGCA
ATCCGGCCTCCTGTGTCCTGCTGGTCGAGGCGAGCGGTGAGCGTTTGTTGTTGACCGGCGATATCGACAGTGCGGCAGAG
CGAGCGCTGCTCGACAGCGGCTTGGACGTGGCGGCCGATTGGCTGCAAGCACCCCACCATGGCAGCCGCACCTCATCTTC
CCAGCGGTTCGTTGACGCCGTGGCGCCCCGTGGCGTGATGATTCCCCGCGGGCAGGGCAATTCTTTCGGCCACCCGCACA
TCAGTGTGGTCGAGCGCTACCGGCAAGCCGGAGCCAGCCTGCACGACAACGCCATTGATGGCGCCCTGCAACTCACGCTG
GGGCGTTTTAGTGGACCAACGGCCTGGCGCAGCCAGCGGCGCTTTTGGCGTGATGACCATGTGCCAGCCCCGTAA

Domains

Predicted by InterproScan.

Competence protein (Competence)

(198-462)

Domain of unknown function (DUF4131) (DUF4131)

(19-166)

Metallo-beta-lactamase superfamily (Lactamase_B)

(498-677)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comA Pseudomonas stutzeri DSM 10701

58.601

96.102

0.563
  comA Ralstonia pseudosolanacearum GMI1000

34.893

100

0.371