Detailed information    

insolico Bioinformatically predicted

Overview

Name   exbB   Type   Machinery gene
Locus tag   QCL65_RS18910 Genome accession   NZ_CP124218
Coordinates   4111632..4112267 (-) Length   211 a.a.
NCBI ID   WP_407311432.1    Uniprot ID   -
Organism   Pseudomonas sp. nanlin1     
Function   ssDNA transport through the inner membrane (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 4106632..4117267
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QCL65_RS18875 (QCL65_18730) - 4106666..4107610 (-) 945 WP_407311418.1 XdhC family protein -
  QCL65_RS18880 (QCL65_18735) murB 4107734..4108753 (-) 1020 WP_407311420.1 UDP-N-acetylmuramate dehydrogenase -
  QCL65_RS18885 (QCL65_18740) - 4108750..4109214 (-) 465 WP_407311422.1 low molecular weight protein-tyrosine-phosphatase -
  QCL65_RS18890 (QCL65_18745) kdsB 4109214..4109978 (-) 765 WP_407311424.1 3-deoxy-manno-octulosonate cytidylyltransferase -
  QCL65_RS18895 (QCL65_18750) - 4109975..4110160 (-) 186 WP_407311426.1 Trm112 family protein -
  QCL65_RS18900 (QCL65_18755) lpxK 4110197..4111207 (-) 1011 WP_407311428.1 tetraacyldisaccharide 4'-kinase -
  QCL65_RS18905 (QCL65_18760) - 4111207..4111635 (-) 429 WP_407311430.1 ExbD/TolR family protein -
  QCL65_RS18910 (QCL65_18765) exbB 4111632..4112267 (-) 636 WP_407311432.1 MotA/TolQ/ExbB proton channel family protein Machinery gene
  QCL65_RS18915 (QCL65_18770) comA 4112353..4114587 (-) 2235 WP_407311434.1 ComEC/Rec2 family competence protein Machinery gene
  QCL65_RS18920 (QCL65_18775) - 4114737..4115258 (+) 522 WP_407311436.1 DUF2062 domain-containing protein -
  QCL65_RS18925 (QCL65_18780) - 4115282..4116061 (-) 780 WP_407311438.1 ABC transporter permease -
  QCL65_RS18930 (QCL65_18785) - 4116058..4116990 (-) 933 WP_407311440.1 ABC transporter ATP-binding protein -

Sequence

Protein


Download         Length: 211 a.a.        Molecular weight: 23170.25 Da        Isoelectric Point: 6.8883

>NTDB_id=823945 QCL65_RS18910 WP_407311432.1 4111632..4112267(-) (exbB) [Pseudomonas sp. nanlin1]
MWELVKSGGWMMLPIILSSIAALGITAERLWTLRASRVAPPHLVGQVWRWRKDKQLNKEKLKELRADSPLGEILAAGLAN
SKHGREVMKESIEEAASRVVHELERYINALGTIAAMAPLLGLLGTVIGMIEIFSSFMGSDMSANPALMASGISKALVTTA
AGLIVAIPALFFHRFLQRRLDELIVGMEQEAIKLVEVVQGEREVDFDEGKV

Nucleotide


Download         Length: 636 bp        

>NTDB_id=823945 QCL65_RS18910 WP_407311432.1 4111632..4112267(-) (exbB) [Pseudomonas sp. nanlin1]
GTGTGGGAATTGGTCAAGTCGGGCGGCTGGATGATGCTGCCGATTATTTTGAGCTCCATCGCCGCTCTAGGTATCACGGC
TGAACGTCTCTGGACCCTGCGGGCAAGCCGCGTCGCACCGCCGCACTTGGTTGGCCAAGTGTGGCGCTGGCGCAAAGACA
AACAGCTGAACAAAGAAAAACTCAAGGAGCTACGCGCCGACTCACCCTTGGGTGAAATCCTGGCGGCCGGGCTGGCCAAC
TCCAAGCATGGCCGCGAAGTCATGAAAGAGTCCATTGAGGAGGCCGCCAGCCGTGTCGTCCATGAACTGGAGCGCTATAT
CAATGCCTTGGGCACCATCGCGGCCATGGCGCCCTTGCTGGGCCTGCTGGGGACGGTGATCGGCATGATCGAAATCTTCA
GCTCGTTCATGGGCAGCGACATGAGCGCCAACCCGGCACTCATGGCCAGTGGTATCTCCAAGGCCCTGGTGACCACCGCC
GCGGGCCTTATCGTGGCGATCCCGGCGCTGTTCTTTCACCGGTTTCTGCAACGCCGGCTCGACGAGCTGATCGTCGGCAT
GGAGCAGGAAGCCATCAAGTTGGTCGAGGTGGTGCAAGGTGAGCGCGAGGTCGATTTCGACGAGGGCAAAGTGTGA

Domains

Predicted by InterproScan.

MotA/TolQ/ExbB proton channel family (MotA_ExbB)

(66-188)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  exbB Pseudomonas stutzeri DSM 10701

81.429

99.526

0.81