Detailed information    

insolico Bioinformatically predicted

Overview

Name   ruvA   Type   Machinery gene
Locus tag   R8625_RS00875 Genome accession   NZ_AP026923
Coordinates   165062..165655 (+) Length   197 a.a.
NCBI ID   WP_000271489.1    Uniprot ID   Q8DRE8
Organism   Streptococcus pneumoniae strain PZ900700054     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 160062..170655
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  R8625_RS00855 (PC0054_01600) ribE 161243..161710 (-) 468 WP_001099502.1 6,7-dimethyl-8-ribityllumazine synthase -
  R8625_RS00860 (PC0054_01610) - 161711..162916 (-) 1206 WP_317649218.1 bifunctional 3,4-dihydroxy-2-butanone-4-phosphate synthase/GTP cyclohydrolase II -
  R8625_RS00865 (PC0054_01620) ribE 162936..163571 (-) 636 WP_000493841.1 riboflavin synthase -
  R8625_RS00870 (PC0054_01630) ribD 163556..164656 (-) 1101 WP_001284095.1 bifunctional diaminohydroxyphosphoribosylaminopyrimidine deaminase/5-amino-6-(5-phosphoribosylamino)uracil reductase RibD -
  R8625_RS00875 (PC0054_01640) ruvA 165062..165655 (+) 594 WP_000271489.1 Holliday junction branch migration protein RuvA Machinery gene
  R8625_RS00880 (PC0054_01650) - 165665..166228 (+) 564 WP_317649219.1 DNA-3-methyladenine glycosylase I -
  R8625_RS00885 (PC0054_01660) - 166225..166902 (+) 678 WP_000987420.1 CPBP family intramembrane glutamic endopeptidase -
  R8625_RS00890 (PC0054_01670) - 167057..168088 (-) 1032 WP_000255118.1 S66 peptidase family protein -
  R8625_RS00895 (PC0054_01680) - 168343..169026 (-) 684 WP_050227233.1 DUF1129 domain-containing protein -
  R8625_RS00900 (PC0054_01690) - 169038..169982 (-) 945 WP_000815629.1 magnesium transporter CorA family protein -

Sequence

Protein


Download         Length: 197 a.a.        Molecular weight: 21548.06 Da        Isoelectric Point: 7.3085

>NTDB_id=82393 R8625_RS00875 WP_000271489.1 165062..165655(+) (ruvA) [Streptococcus pneumoniae strain PZ900700054]
MYAYLKGIITKITAKYIVLETNGIGYILHVANPYAYSGQVNQEAQIYVHQVVREDAHLLYGFRSEDEKKLFLSLISVSGI
GPVSALAIIAADDNAGLVQAIETKNITYLTKFPKIGKKTAQQMVLDLEGKVVVAGDGLPAKVAVQASAENQELEEAMEAM
LALGYKATELKKIKKFFEGTTDTAENYIKSALKMLVK

Nucleotide


Download         Length: 594 bp        

>NTDB_id=82393 R8625_RS00875 WP_000271489.1 165062..165655(+) (ruvA) [Streptococcus pneumoniae strain PZ900700054]
ATGTACGCATATTTAAAAGGAATCATTACCAAAATTACTGCCAAATACATTGTTCTTGAAACCAATGGTATTGGTTATAT
CCTGCATGTGGCCAATCCTTATGCCTATTCAGGTCAGGTTAATCAGGAGGCTCAGATTTATGTGCATCAGGTTGTGCGTG
AGGACGCCCATTTGCTTTATGGATTTCGCTCAGAGGATGAGAAAAAGCTCTTTCTTAGTCTGATTTCGGTCTCTGGGATT
GGTCCTGTATCAGCTCTTGCTATTATCGCTGCTGATGACAATGCTGGCTTGGTTCAAGCCATTGAAACCAAGAACATCAC
CTACTTGACCAAGTTCCCTAAAATTGGCAAGAAAACAGCCCAGCAGATGGTGCTGGACTTGGAAGGCAAGGTAGTAGTTG
CAGGAGATGGCCTTCCTGCCAAGGTCGCAGTGCAAGCAAGTGCTGAAAACCAAGAATTGGAAGAAGCTATGGAAGCCATG
TTGGCTCTGGGCTACAAGGCAACAGAGCTCAAGAAAATCAAGAAATTCTTTGAAGGAACGACAGATACAGCTGAGAACTA
TATCAAGTCGGCCCTTAAAATGTTGGTCAAATAG

Domains

Predicted by InterProScan.

Helix-hairpin-helix domain (HHH_5)

(71-127)

RuvA N terminal domain (RuvA_N)

(1-61)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB Q8DRE8

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ruvA Streptococcus pneumoniae R6

100

100

1
  ruvA Streptococcus pneumoniae D39

100

100

1
  ruvA Streptococcus pneumoniae TIGR4

99.492

100

0.995
  ruvA Bacillus subtilis subsp. subtilis str. 168

39.806

100

0.416

Multiple sequence alignment