Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssbA   Type   Machinery gene
Locus tag   QHG38_RS12180 Genome accession   NZ_CP123979
Coordinates   2510515..2511027 (-) Length   170 a.a.
NCBI ID   WP_011276866.1    Uniprot ID   A0A5B2YXI2
Organism   Staphylococcus haemolyticus strain SH1275     
Function   ssDNA binding (predicted from homology)   
DNA processing

Related MGE

Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.

Gene-MGE association summary

MGE type MGE coordinates Gene coordinates Relative position Distance (bp)
IScluster/Tn 2502291..2509818 2510515..2511027 flank 697


Gene organization within MGE regions


Location: 2502291..2511027
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QHG38_RS12145 (QHG38_12145) - 2503746..2505060 (+) 1315 Protein_2341 ISL3 family transposase -
  QHG38_RS12150 (QHG38_12150) - 2505189..2505437 (-) 249 WP_011276862.1 GlsB/YeaQ/YmgE family stress response membrane protein -
  QHG38_RS12155 (QHG38_12155) - 2505615..2506364 (-) 750 Protein_2343 amidohydrolase family protein -
  QHG38_RS12160 (QHG38_12160) - 2506580..2506837 (+) 258 WP_011276864.1 hypothetical protein -
  QHG38_RS12165 (QHG38_12165) - 2507040..2508110 (+) 1071 WP_011276865.1 Ltp family lipoprotein -
  QHG38_RS12170 (QHG38_12170) - 2508132..2509818 (-) 1687 Protein_2346 IS1182 family transposase -
  QHG38_RS12175 (QHG38_12175) rpsR 2510225..2510467 (-) 243 WP_002447994.1 30S ribosomal protein S18 -
  QHG38_RS12180 (QHG38_12180) ssbA 2510515..2511027 (-) 513 WP_011276866.1 single-stranded DNA-binding protein Machinery gene

Sequence

Protein


Download         Length: 170 a.a.        Molecular weight: 18837.38 Da        Isoelectric Point: 4.7306

>NTDB_id=823551 QHG38_RS12180 WP_011276866.1 2510515..2511027(-) (ssbA) [Staphylococcus haemolyticus strain SH1275]
MINRVVLVGRLTKDPEYRTTPSGVSVATFTLAVNRTFTNAQGEREADFINVVVFRRQAENVNNYLFKGSLAGVDGRIQSR
SYENQEGRRIFVTEVVADSVQFLEPKNAQGGQRNQSNNNDFQDYGQGFGGQQSGQNTSYNNNNSSNNKQSDNPFANANGP
IDISDDDLPF

Nucleotide


Download         Length: 513 bp        

>NTDB_id=823551 QHG38_RS12180 WP_011276866.1 2510515..2511027(-) (ssbA) [Staphylococcus haemolyticus strain SH1275]
ATGATAAACAGAGTTGTATTAGTAGGTCGTTTAACTAAAGATCCAGAATACAGAACCACTCCCTCAGGCGTAAGTGTAGC
GACATTTACTCTAGCAGTTAATCGTACTTTCACGAATGCTCAAGGGGAACGCGAAGCTGACTTCATCAATGTTGTTGTAT
TTAGAAGACAAGCAGAGAATGTGAATAATTATTTATTCAAAGGTAGTCTAGCTGGCGTTGATGGTCGCATACAATCACGC
AGTTATGAAAATCAAGAAGGTCGTCGTATCTTTGTTACTGAAGTTGTAGCAGATAGTGTTCAATTCCTTGAACCTAAAAA
TGCTCAAGGTGGCCAACGTAATCAAAGTAATAACAATGATTTCCAAGACTACGGTCAAGGATTTGGTGGTCAACAATCAG
GACAAAATACATCTTACAATAACAATAATTCATCAAATAATAAACAATCTGATAATCCATTTGCAAACGCAAACGGACCG
ATTGATATTAGTGATGATGACTTACCATTCTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-103)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A5B2YXI2

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssbA Bacillus subtilis subsp. subtilis str. 168

62.921

100

0.659
  ssb Latilactobacillus sakei subsp. sakei 23K

54.07

100

0.547
  ssbB Bacillus subtilis subsp. subtilis str. 168

60.377

62.353

0.376