Detailed information    

insolico Bioinformatically predicted

Overview

Name   comGA   Type   Machinery gene
Locus tag   QEP20_RS12420 Genome accession   NZ_CP123977
Coordinates   2415609..2416679 (-) Length   356 a.a.
NCBI ID   WP_004399124.1    Uniprot ID   A0A809FNW6
Organism   Bacillus subtilis subsp. subtilis strain WH60A     
Function   dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2410609..2421679
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QEP20_RS12375 (QEP20_12375) tapA 2411088..2411849 (-) 762 WP_029726724.1 amyloid fiber anchoring/assembly protein TapA -
  QEP20_RS12380 (QEP20_12380) yqzG 2412120..2412446 (+) 327 WP_003246051.1 YqzG/YhdC family protein -
  QEP20_RS12385 (QEP20_12385) spoIIT 2412488..2412667 (-) 180 WP_029726723.1 YqzE family protein -
  QEP20_RS12390 (QEP20_12390) comGG 2412739..2413113 (-) 375 WP_029726722.1 ComG operon protein ComGG Machinery gene
  QEP20_RS12395 (QEP20_12395) comGF 2413114..2413497 (-) 384 WP_029726721.1 ComG operon protein ComGF Machinery gene
  QEP20_RS12400 (QEP20_12400) comGE 2413523..2413870 (-) 348 WP_014480255.1 ComG operon protein 5 Machinery gene
  QEP20_RS12405 (QEP20_12405) comGD 2413854..2414285 (-) 432 WP_029726720.1 comG operon protein ComGD Machinery gene
  QEP20_RS12410 (QEP20_12410) comGC 2414275..2414571 (-) 297 WP_029726719.1 comG operon protein ComGC Machinery gene
  QEP20_RS12415 (QEP20_12415) comGB 2414585..2415622 (-) 1038 WP_029726718.1 comG operon protein ComGB Machinery gene
  QEP20_RS12420 (QEP20_12420) comGA 2415609..2416679 (-) 1071 WP_004399124.1 competence protein ComGA Machinery gene
  QEP20_RS12425 (QEP20_12425) - 2416892..2417089 (-) 198 WP_029726717.1 hypothetical protein -
  QEP20_RS12430 (QEP20_12430) corA 2417091..2418044 (-) 954 WP_004399136.1 magnesium transporter CorA -
  QEP20_RS12435 (QEP20_12435) yqhB 2418187..2419515 (+) 1329 WP_029726716.1 hemolysin family protein -
  QEP20_RS12440 (QEP20_12440) rsbRD 2419568..2420404 (-) 837 WP_003230149.1 RsbT co-antagonist protein RsbRD -
  QEP20_RS12450 (QEP20_12450) mgsR 2420628..2421008 (-) 381 WP_003230147.1 transcriptional regulator MgsR -
  QEP20_RS12455 (QEP20_12455) yqgY 2421240..2421485 (+) 246 WP_003226300.1 DUF2626 domain-containing protein -

Sequence

Protein


Download         Length: 356 a.a.        Molecular weight: 40458.64 Da        Isoelectric Point: 9.0175

>NTDB_id=823486 QEP20_RS12420 WP_004399124.1 2415609..2416679(-) (comGA) [Bacillus subtilis subsp. subtilis strain WH60A]
MDSIEKVSKNLIEEAYLTKASDIHIVPRERDAIIHFRVDHALLKKRDMKKEECVRLISHFKFLSAMDIGERRKPQNGSLT
LKLKEGNVHLRMSTLPTINEESLVIRVMPQYNIPSIDKLSLFPKTGATLLSFLKHSHGMLIFTGPTGSGKTTTLYSLVQY
AKKHFNRNIVTLEDPVETRDEDVLQVQVNEKAGVTYSAGLKAILRHDPDMIILGEIRDAETAEIAVRAAMTGHLVLTSLH
TRDAKGAIYRLLEFGINMNEIEQTVIAIAAQRLVDLACPFCENGCSSVYCRQSRNTRRASVYELLYGKNLQQCIQEAKGN
HANYQYQTLRQIIRKGIALGYLTTNNYDRWVYHEKD

Nucleotide


Download         Length: 1071 bp        

>NTDB_id=823486 QEP20_RS12420 WP_004399124.1 2415609..2416679(-) (comGA) [Bacillus subtilis subsp. subtilis strain WH60A]
TTGGATTCAATAGAAAAGGTAAGCAAAAACTTGATTGAAGAGGCATATCTAACAAAGGCTTCTGATATTCACATTGTGCC
GAGGGAGCGGGACGCTATCATTCATTTTCGGGTCGATCATGCCTTGCTGAAAAAAAGGGACATGAAAAAAGAAGAGTGCG
TAAGGCTGATTTCACATTTTAAATTTCTTTCAGCAATGGATATAGGTGAAAGGCGAAAGCCGCAAAACGGTTCGCTTACG
TTAAAGCTGAAAGAGGGAAATGTTCATTTAAGAATGTCAACGCTGCCCACAATTAATGAAGAAAGCCTCGTGATCAGAGT
GATGCCCCAATACAATATCCCTTCGATTGATAAATTGTCGCTATTTCCGAAGACAGGAGCCACATTACTCTCGTTTTTAA
AACATTCCCATGGCATGCTCATTTTTACCGGGCCAACTGGTTCAGGGAAGACTACCACACTATACTCTCTCGTTCAATAT
GCAAAAAAACACTTTAATCGAAATATTGTCACATTAGAGGACCCTGTTGAAACAAGGGACGAAGATGTTCTTCAGGTTCA
GGTGAATGAAAAAGCCGGTGTAACTTATTCCGCAGGTCTGAAAGCAATTTTGCGCCATGACCCCGATATGATTATTTTAG
GTGAGATCAGAGACGCGGAAACAGCTGAAATTGCGGTGCGGGCAGCGATGACGGGACATCTGGTACTAACGAGCCTTCAT
ACGAGAGACGCAAAGGGCGCAATTTACAGACTGCTTGAATTCGGTATCAATATGAATGAAATCGAACAGACTGTCATTGC
AATAGCGGCTCAGCGCTTGGTTGATTTGGCTTGCCCGTTTTGTGAAAACGGATGTTCATCAGTGTATTGCCGACAGTCAC
GAAATACCAGGAGAGCTAGCGTTTATGAGCTTCTATACGGGAAAAATCTTCAGCAATGTATCCAGGAGGCAAAAGGAAAT
CATGCAAATTACCAATATCAAACGCTTCGTCAAATTATCAGAAAAGGAATTGCGCTCGGCTATTTAACGACAAACAACTA
TGACCGGTGGGTTTATCATGAAAAAGATTAG

Domains

Predicted by InterproScan.

Type II/IV secretion system protein (T2SSE)

(10-275)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A809FNW6

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comGA Bacillus subtilis subsp. subtilis str. 168

100

100

1