Detailed information    

insolico Bioinformatically predicted

Overview

Name   comA   Type   Machinery gene
Locus tag   QGQ83_RS04830 Genome accession   NZ_CP123957
Coordinates   1030819..1033044 (-) Length   741 a.a.
NCBI ID   WP_281113418.1    Uniprot ID   -
Organism   Pseudomonas marginalis strain MGMM3     
Function   ssDNA transport through the inner membrane (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1025819..1038044
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QGQ83_RS04795 (QGQ83_04795) murB 1026189..1027208 (-) 1020 WP_281113416.1 UDP-N-acetylmuramate dehydrogenase -
  QGQ83_RS04800 (QGQ83_04800) - 1027205..1027669 (-) 465 WP_141606708.1 low molecular weight protein-tyrosine-phosphatase -
  QGQ83_RS04805 (QGQ83_04805) kdsB 1027669..1028433 (-) 765 WP_141606709.1 3-deoxy-manno-octulosonate cytidylyltransferase -
  QGQ83_RS04810 (QGQ83_04810) - 1028430..1028615 (-) 186 WP_003174668.1 Trm112 family protein -
  QGQ83_RS04815 (QGQ83_04815) lpxK 1028639..1029649 (-) 1011 WP_281113417.1 tetraacyldisaccharide 4'-kinase -
  QGQ83_RS04820 (QGQ83_04820) - 1029649..1030077 (-) 429 WP_027607319.1 biopolymer transporter ExbD -
  QGQ83_RS04825 (QGQ83_04825) exbB 1030074..1030709 (-) 636 WP_027607320.1 MotA/TolQ/ExbB proton channel family protein Machinery gene
  QGQ83_RS04830 (QGQ83_04830) comA 1030819..1033044 (-) 2226 WP_281113418.1 ComEC/Rec2 family competence protein Machinery gene
  QGQ83_RS04835 (QGQ83_04835) - 1033180..1033695 (+) 516 WP_281113419.1 DUF2062 domain-containing protein -
  QGQ83_RS04840 (QGQ83_04840) - 1033936..1036689 (+) 2754 WP_281113420.1 response regulator -
  QGQ83_RS04845 (QGQ83_04845) - 1036713..1037702 (+) 990 WP_141606711.1 2-hydroxyacid dehydrogenase -

Sequence

Protein


Download         Length: 741 a.a.        Molecular weight: 80421.29 Da        Isoelectric Point: 10.5507

>NTDB_id=823230 QGQ83_RS04830 WP_281113418.1 1030819..1033044(-) (comA) [Pseudomonas marginalis strain MGMM3]
MKTGMFALALGLLALRFLPALPSTGWLIAMLVLALMLLPFRTSPLAFFLLGLSWACISAQWALDDRLRPVLDGQTRWLEG
RVTGLPQQTGTGVRFELADSQARNARLPKRIRVFWHGGPPVRSGERWRLAVTLKRPAGLLNFHGFDQEAWLLAQRIGATG
SVKDGERLAPARHAWRDTVRQRLMAVDAQGREAGLAALVLGDGSGLAAEDWQVLQDTGTVHLLVISGQHIGLLAGLIYGL
VALLARYGCWPRTWPWLPWACGLAFAAALGYGLLAGFGVPVQRACVMVGLVLLWRLRFRHLGFWWPLLLALNGVLILEPL
ASLQPGFWLSFMAVAVLVLGFGGRLGPWSVWQTWTRPQCLIAVGLFPVLLVLGLPVSVSAPLANLVAVPWISLVVLPLAL
LGSALLPLPYAGEGLLWLAGGALDGLFRGLAWLAGQMPAWIPAEVPLGYWLISLVGAVLLLLPSGVPFRPLGLPLLLLAV
FPPRELVPHGRVEVVQLDVGQGQALILRTRHHTLLYDAGPRSGTVDLGARVVVPALKKLGVGTLDMMLLSHADADHAGGA
SAVARGLPIRRVVGGETEGLPGFLATQPCVSGERWEWDGVAFELWQWSDAIDGNPKSCVLQVQANGERLLLTGDIDRAAE
RAFLASSLAVRTDWLQSPHHGSRSSSSWPFLQRLAPTSVLISRGRGNAFGHPHPQVVERYQRLGSQIYDSAEQGAVRVQL
GAFQPPTVARSQRRFWRETLP

Nucleotide


Download         Length: 2226 bp        

>NTDB_id=823230 QGQ83_RS04830 WP_281113418.1 1030819..1033044(-) (comA) [Pseudomonas marginalis strain MGMM3]
ATGAAGACAGGGATGTTCGCGCTCGCGCTGGGGTTGCTTGCCTTGCGCTTTCTACCGGCGTTGCCGTCGACGGGGTGGCT
GATAGCCATGTTGGTGCTGGCATTGATGCTATTGCCTTTTCGTACGTCGCCACTGGCATTTTTCCTGCTGGGCTTGAGCT
GGGCCTGCATCAGCGCGCAGTGGGCGCTGGATGATCGACTACGGCCGGTGCTGGATGGCCAGACGCGATGGCTGGAAGGC
CGTGTAACCGGGTTGCCGCAGCAGACAGGGACGGGCGTGCGTTTTGAGCTGGCCGACAGCCAGGCGCGCAACGCCCGGTT
GCCCAAGCGCATCCGGGTGTTTTGGCACGGCGGGCCGCCGGTACGCAGTGGCGAGCGCTGGCGTCTGGCCGTGACGCTGA
AACGGCCTGCCGGGCTGCTCAATTTTCACGGTTTCGATCAGGAGGCCTGGCTGCTGGCCCAGCGCATTGGCGCCACCGGC
TCGGTGAAGGATGGTGAGCGTCTGGCGCCGGCGCGTCATGCCTGGCGTGACACGGTCCGCCAACGCCTGATGGCGGTGGA
CGCCCAAGGCCGCGAGGCGGGCCTGGCGGCTTTGGTGCTGGGGGATGGCTCCGGGCTGGCGGCCGAAGACTGGCAGGTGT
TGCAGGACACCGGTACGGTGCACCTGTTGGTGATTTCCGGCCAGCACATTGGCTTGCTGGCGGGGTTGATCTACGGGTTG
GTCGCGCTACTTGCGCGCTACGGCTGCTGGCCCCGCACCTGGCCGTGGCTGCCGTGGGCGTGCGGCCTGGCGTTTGCCGC
CGCGCTGGGGTACGGCCTGCTGGCAGGGTTTGGCGTGCCGGTGCAACGGGCCTGCGTCATGGTGGGGCTGGTGTTGTTGT
GGCGCCTGCGCTTTCGTCATCTGGGCTTCTGGTGGCCGTTGTTGCTGGCACTCAATGGCGTGCTGATCCTGGAGCCACTG
GCCAGCTTGCAACCCGGATTCTGGCTGTCCTTCATGGCTGTCGCGGTGCTGGTCCTGGGATTTGGTGGGCGCTTGGGGCC
GTGGAGTGTCTGGCAGACATGGACACGTCCCCAGTGCTTGATTGCCGTTGGTCTGTTTCCTGTGTTGCTGGTACTCGGCT
TGCCCGTCAGCGTCAGTGCGCCGCTGGCCAACCTGGTTGCCGTGCCGTGGATCAGCCTGGTGGTGTTGCCCCTGGCCTTG
CTGGGGAGCGCATTGTTGCCGCTGCCGTATGCGGGTGAGGGCTTGTTGTGGCTGGCGGGTGGGGCGCTTGACGGGTTGTT
CCGGGGCTTGGCATGGCTCGCTGGGCAAATGCCTGCCTGGATACCGGCCGAGGTGCCCCTGGGTTACTGGCTGATCAGCC
TGGTCGGCGCGGTGCTGTTACTGCTGCCCAGCGGCGTGCCGTTTCGGCCCCTGGGCTTGCCGCTGCTGTTGTTGGCCGTG
TTTCCACCCCGCGAGCTCGTGCCCCATGGGCGGGTGGAGGTGGTGCAGCTGGATGTCGGGCAAGGTCAGGCCTTGATCCT
GCGTACCCGCCATCACACGTTGCTCTACGATGCCGGCCCGCGTTCGGGGACGGTTGACCTCGGTGCCCGTGTGGTAGTGC
CTGCGTTGAAAAAGCTCGGCGTCGGGACGCTGGATATGATGCTGCTGAGCCACGCCGACGCCGATCATGCCGGTGGGGCG
TCGGCTGTTGCCCGAGGGTTGCCGATCCGGCGTGTCGTGGGCGGTGAAACCGAAGGGTTGCCCGGGTTTCTCGCCACCCA
GCCCTGCGTCAGCGGCGAACGGTGGGAGTGGGACGGTGTGGCATTCGAGCTGTGGCAGTGGTCTGATGCGATTGATGGCA
ACCCCAAGTCCTGTGTTCTGCAGGTCCAGGCCAACGGTGAGCGGCTGCTGCTCACGGGGGATATTGATCGGGCTGCCGAG
CGAGCATTTCTCGCGTCTTCGCTGGCCGTGCGCACCGATTGGCTGCAGTCGCCTCACCATGGCAGCCGCAGTTCGTCGTC
CTGGCCTTTTCTACAGCGGCTGGCGCCCACGTCGGTGCTGATTTCCCGTGGGCGTGGCAATGCGTTCGGCCATCCTCACC
CGCAGGTGGTGGAGCGCTACCAGCGACTGGGCAGCCAGATATACGACAGTGCCGAGCAGGGCGCGGTGCGTGTGCAATTA
GGGGCTTTCCAGCCACCGACTGTTGCGCGTAGTCAACGCCGTTTTTGGCGCGAAACGTTACCCTGA

Domains

Predicted by InterproScan.

Competence protein (Competence)

(198-463)

Metallo-beta-lactamase superfamily (Lactamase_B)

(498-646)

Domain of unknown function (DUF4131) (DUF4131)

(19-167)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comA Pseudomonas stutzeri DSM 10701

60.278

97.166

0.586
  comA Ralstonia pseudosolanacearum GMI1000

35.435

100

0.379