Detailed information    

insolico Bioinformatically predicted

Overview

Name   exbB   Type   Machinery gene
Locus tag   QGQ83_RS04825 Genome accession   NZ_CP123957
Coordinates   1030074..1030709 (-) Length   211 a.a.
NCBI ID   WP_027607320.1    Uniprot ID   A0A7Y1IKE2
Organism   Pseudomonas marginalis strain MGMM3     
Function   ssDNA transport through the inner membrane (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1025074..1035709
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QGQ83_RS04790 (QGQ83_04790) - 1025455..1026126 (+) 672 WP_027607314.1 Bax inhibitor-1/YccA family protein -
  QGQ83_RS04795 (QGQ83_04795) murB 1026189..1027208 (-) 1020 WP_281113416.1 UDP-N-acetylmuramate dehydrogenase -
  QGQ83_RS04800 (QGQ83_04800) - 1027205..1027669 (-) 465 WP_141606708.1 low molecular weight protein-tyrosine-phosphatase -
  QGQ83_RS04805 (QGQ83_04805) kdsB 1027669..1028433 (-) 765 WP_141606709.1 3-deoxy-manno-octulosonate cytidylyltransferase -
  QGQ83_RS04810 (QGQ83_04810) - 1028430..1028615 (-) 186 WP_003174668.1 Trm112 family protein -
  QGQ83_RS04815 (QGQ83_04815) lpxK 1028639..1029649 (-) 1011 WP_281113417.1 tetraacyldisaccharide 4'-kinase -
  QGQ83_RS04820 (QGQ83_04820) - 1029649..1030077 (-) 429 WP_027607319.1 biopolymer transporter ExbD -
  QGQ83_RS04825 (QGQ83_04825) exbB 1030074..1030709 (-) 636 WP_027607320.1 MotA/TolQ/ExbB proton channel family protein Machinery gene
  QGQ83_RS04830 (QGQ83_04830) comA 1030819..1033044 (-) 2226 WP_281113418.1 ComEC/Rec2 family competence protein Machinery gene
  QGQ83_RS04835 (QGQ83_04835) - 1033180..1033695 (+) 516 WP_281113419.1 DUF2062 domain-containing protein -

Sequence

Protein


Download         Length: 211 a.a.        Molecular weight: 22856.99 Da        Isoelectric Point: 7.3613

>NTDB_id=823229 QGQ83_RS04825 WP_027607320.1 1030074..1030709(-) (exbB) [Pseudomonas marginalis strain MGMM3]
MWELVKSGGWMMLPIILSSIAALGIVAERLWTLRASRVTPEHLLGQVWSWIKNKQLDKDKLKELRANSPLGEILAAGLAN
SKHGREIMKECIEEAAARVIHELERYINALGTIAAMAPLLGLLGTVLGMIDIFSSFMGSGMTTNAAVLAGGISKALITTA
AGLMVGIPSVFFHRFLQRRIDELVVGMEQEAIKLVEVVQGDRDVDLVGGKA

Nucleotide


Download         Length: 636 bp        

>NTDB_id=823229 QGQ83_RS04825 WP_027607320.1 1030074..1030709(-) (exbB) [Pseudomonas marginalis strain MGMM3]
GTGTGGGAATTGGTCAAATCTGGTGGCTGGATGATGTTGCCCATCATCCTGAGCTCCATCGCCGCACTCGGCATCGTTGC
CGAACGTTTGTGGACCCTGCGCGCCAGTCGCGTCACCCCCGAGCATCTGCTGGGGCAGGTCTGGAGCTGGATCAAGAACA
AGCAGCTGGACAAGGACAAACTCAAGGAACTGCGCGCCAACTCGCCCCTGGGTGAAATCCTCGCCGCCGGCCTGGCCAAC
TCCAAGCATGGTCGCGAGATCATGAAGGAGTGCATCGAAGAGGCCGCCGCCCGGGTCATCCATGAACTGGAACGCTATAT
CAACGCCCTCGGCACCATTGCCGCCATGGCACCGTTGCTCGGCTTGCTGGGGACGGTACTGGGCATGATCGATATCTTCA
GCTCGTTCATGGGCTCGGGCATGACCACCAACGCGGCCGTACTGGCCGGCGGCATCTCCAAGGCCCTGATTACCACGGCG
GCGGGCCTGATGGTCGGTATTCCTTCGGTGTTCTTCCACCGTTTCCTGCAGCGGCGCATCGATGAACTGGTGGTTGGTAT
GGAGCAGGAAGCCATCAAGCTGGTGGAAGTGGTGCAGGGTGACCGTGATGTGGACCTGGTTGGGGGCAAAGCGTGA

Domains

Predicted by InterproScan.

MotA/TolQ/ExbB proton channel family (MotA_ExbB)

(66-188)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A7Y1IKE2

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  exbB Pseudomonas stutzeri DSM 10701

85.308

100

0.853