Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilD   Type   Machinery gene
Locus tag   QHG52_RS19360 Genome accession   NZ_CP123912
Coordinates   4184348..4185229 (+) Length   293 a.a.
NCBI ID   WP_005035380.1    Uniprot ID   N9E3X9
Organism   Acinetobacter bereziniae strain UCO-553     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 4179348..4190229
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QHG52_RS19340 secG 4179949..4180290 (-) 342 WP_005035388.1 preprotein translocase subunit SecG -
  QHG52_RS19345 tpiA 4180300..4181094 (-) 795 WP_005035386.1 triose-phosphate isomerase -
  QHG52_RS19350 pilB 4181373..4183088 (+) 1716 WP_026040257.1 type IV-A pilus assembly ATPase PilB Machinery gene
  QHG52_RS19355 pilC 4183116..4184345 (+) 1230 WP_005035382.1 type II secretion system F family protein Machinery gene
  QHG52_RS19360 pilD 4184348..4185229 (+) 882 WP_005035380.1 A24 family peptidase Machinery gene
  QHG52_RS19365 coaE 4185255..4185854 (+) 600 WP_005035377.1 dephospho-CoA kinase -
  QHG52_RS19370 - 4185901..4186821 (-) 921 WP_005035375.1 DMT family transporter -
  QHG52_RS19375 rlmB 4186862..4187614 (-) 753 WP_005035372.1 23S rRNA (guanosine(2251)-2'-O)-methyltransferase RlmB -
  QHG52_RS19380 - 4187758..4188081 (-) 324 WP_004718357.1 pyrimidine/purine nucleoside phosphorylase -

Sequence

Protein


Download         Length: 293 a.a.        Molecular weight: 32650.99 Da        Isoelectric Point: 7.4651

>NTDB_id=823085 QHG52_RS19360 WP_005035380.1 4184348..4185229(+) (pilD) [Acinetobacter bereziniae strain UCO-553]
MGMFHDFLNLLIQSSTALYIVVGLVSLCVGSFLNVVIYRTPKMMEKEWRQEWQAECQLLAGSQQIVIDEEKLSLSQPAST
CPQCKTPIRWYQNIPVISWLALRGKCASCQNPISIRYPLVELLTAIGSLTVVAVYGPTLQMVFGVLLTWVLITLTFIDFD
TQLLPDRFTLTLAAVGLGINSFEIYTTANAAIWGYIIGFLCLWIVYYLFKIVTGKEGMGYGDFKLLAALGAWMGPLMLPL
IILLSSVVGAIIGIILLKIRKENTPFAFGPYIAIAGWIAFLWGEQIMKIYLGQ

Nucleotide


Download         Length: 882 bp        

>NTDB_id=823085 QHG52_RS19360 WP_005035380.1 4184348..4185229(+) (pilD) [Acinetobacter bereziniae strain UCO-553]
ATGGGTATGTTTCACGATTTTTTAAACCTTCTGATTCAATCATCGACTGCGCTCTATATTGTTGTCGGTCTAGTTAGCCT
GTGTGTGGGGAGTTTCCTCAATGTGGTGATTTATCGCACACCAAAGATGATGGAAAAGGAATGGCGGCAAGAGTGGCAAG
CAGAATGTCAATTGCTTGCTGGTTCTCAACAGATCGTCATTGACGAAGAAAAACTGAGTCTGAGTCAACCAGCGTCTACC
TGTCCACAATGTAAAACACCGATTCGCTGGTATCAAAATATCCCCGTGATCAGTTGGTTGGCGTTACGTGGTAAATGTGC
TTCATGTCAAAACCCCATCAGTATCCGCTATCCTTTGGTTGAACTACTGACAGCAATCGGCTCCTTAACCGTTGTTGCAG
TATATGGACCAACACTGCAAATGGTGTTTGGCGTATTGCTGACATGGGTACTGATTACCCTGACCTTTATTGATTTTGAT
ACACAATTATTACCTGATCGTTTTACCTTAACACTCGCGGCTGTGGGTTTAGGAATTAACTCATTTGAAATATATACCAC
GGCAAACGCTGCAATTTGGGGTTATATTATTGGTTTTCTTTGCCTATGGATTGTCTATTACCTGTTTAAAATCGTGACAG
GTAAGGAAGGCATGGGTTATGGTGACTTTAAGCTTCTTGCTGCACTGGGTGCTTGGATGGGACCGTTGATGTTGCCTTTA
ATTATCCTACTTTCCTCGGTTGTCGGGGCAATCATTGGTATCATCCTGCTAAAAATTCGTAAGGAAAATACTCCTTTTGC
TTTTGGACCCTATATCGCCATTGCAGGTTGGATTGCATTCTTATGGGGCGAACAAATCATGAAGATTTACTTAGGTCAAT
AA

Domains

Predicted by InterproScan.

Bacterial Peptidase A24 N-terminal domain (A24_N_bact)

(25-133)

Type IV leader peptidase family (Peptidase_A24)

(146-254)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB N9E3X9

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilD Acinetobacter baumannii D1279779

76.042

98.294

0.747
  pilD Acinetobacter nosocomialis M2

76.042

98.294

0.747
  pilD Vibrio campbellii strain DS40M4

53.597

94.881

0.509
  pilD Vibrio cholerae strain A1552

53.261

94.198

0.502
  pilD Neisseria gonorrhoeae MS11

44.61

91.809

0.41