Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilB   Type   Machinery gene
Locus tag   QHG52_RS19350 Genome accession   NZ_CP123912
Coordinates   4181373..4183088 (+) Length   571 a.a.
NCBI ID   WP_026040257.1    Uniprot ID   -
Organism   Acinetobacter bereziniae strain UCO-553     
Function   power the assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 4176373..4188088
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QHG52_RS19310 nusA 4177113..4178597 (-) 1485 WP_004826370.1 transcription termination factor NusA -
  QHG52_RS19315 rimP 4178632..4179156 (-) 525 WP_004826368.1 ribosome maturation factor RimP -
  QHG52_RS19340 secG 4179949..4180290 (-) 342 WP_005035388.1 preprotein translocase subunit SecG -
  QHG52_RS19345 tpiA 4180300..4181094 (-) 795 WP_005035386.1 triose-phosphate isomerase -
  QHG52_RS19350 pilB 4181373..4183088 (+) 1716 WP_026040257.1 type IV-A pilus assembly ATPase PilB Machinery gene
  QHG52_RS19355 pilC 4183116..4184345 (+) 1230 WP_005035382.1 type II secretion system F family protein Machinery gene
  QHG52_RS19360 pilD 4184348..4185229 (+) 882 WP_005035380.1 A24 family peptidase Machinery gene
  QHG52_RS19365 coaE 4185255..4185854 (+) 600 WP_005035377.1 dephospho-CoA kinase -
  QHG52_RS19370 - 4185901..4186821 (-) 921 WP_005035375.1 DMT family transporter -
  QHG52_RS19375 rlmB 4186862..4187614 (-) 753 WP_005035372.1 23S rRNA (guanosine(2251)-2'-O)-methyltransferase RlmB -
  QHG52_RS19380 - 4187758..4188081 (-) 324 WP_004718357.1 pyrimidine/purine nucleoside phosphorylase -

Sequence

Protein


Download         Length: 571 a.a.        Molecular weight: 63400.85 Da        Isoelectric Point: 4.9070

>NTDB_id=823083 QHG52_RS19350 WP_026040257.1 4181373..4183088(+) (pilB) [Acinetobacter bereziniae strain UCO-553]
MSMQNGSPKFSGYIRRLVDEGFLSAQQMKDALTSAQKSKTHLVPYLIEKLAISPLLIAEMISSEFGEPIFDLDSFNPEML
PKDIVDAGLISKHSVIPLVQRGNILYVATSDPTNIEALDAIRFSCGLNIEPIIVEHHKLLKNLEKHFTVEESFNFGDEDF
DVDIIATDDAPPSDDDDEETSEEEAPIVKYINKLLIDAIRMGASDLHFEPYEKSYRVRYRVDGVLRTITNPPLQLANRLA
SRLKVMSQMDISEKRIPQDGRIKLKLSKTKAIDFRVNSLPTLFGEKLVLRILDPSSAMLGIDALGYEEDQKALFMEALER
PQGMLLITGPTGSGKTVSLYTGLNILNTESSNISTAEDPVEINLEGINQVNVNLKAGLTFSVALKSFLRQDPDIIMVGEI
RDLETAEIAIKAAQTGHMVMSTLHTNSAPETLTRLRNMGVPSFNIATSVNLVIAQRLARRLCNHCKAPIEIPKQSLLELG
FTEQDLNHPDLQIFQPMGCSECREGYKGRVGIYEVMKVTPEISKIIMEDGNALQIAAASEKLGFDNLRRSGLKKVMNGLT
SLQEINRVTSE

Nucleotide


Download         Length: 1716 bp        

>NTDB_id=823083 QHG52_RS19350 WP_026040257.1 4181373..4183088(+) (pilB) [Acinetobacter bereziniae strain UCO-553]
ATGTCTATGCAAAATGGTTCACCTAAGTTTTCGGGTTATATCCGTCGCTTAGTCGATGAAGGCTTTTTATCTGCTCAGCA
AATGAAAGATGCCTTAACAAGCGCTCAAAAAAGTAAAACCCATTTGGTGCCTTACTTGATTGAGAAATTAGCGATCTCAC
CATTGCTGATCGCTGAAATGATCTCTTCCGAGTTCGGCGAGCCTATTTTTGATCTAGACAGTTTTAACCCTGAAATGTTG
CCCAAGGACATTGTTGACGCCGGTTTGATCAGCAAACATAGTGTGATTCCATTGGTGCAACGTGGTAATATCTTATATGT
TGCCACCAGCGACCCCACCAATATCGAGGCACTTGATGCGATTCGTTTTAGTTGTGGTCTAAACATTGAACCAATCATCG
TTGAACATCATAAATTATTAAAAAATTTAGAAAAGCATTTTACTGTAGAAGAAAGCTTTAATTTTGGCGATGAAGATTTT
GATGTCGATATTATTGCGACGGATGATGCTCCACCTTCAGATGACGATGATGAGGAAACTTCCGAAGAAGAAGCACCGAT
TGTTAAATATATCAATAAACTGTTGATTGATGCCATTCGAATGGGCGCCTCAGACTTACATTTTGAACCTTATGAAAAAA
GTTATCGTGTTCGCTATCGCGTAGATGGCGTACTGAGAACCATTACCAATCCCCCACTGCAATTGGCAAATCGTTTGGCA
TCCCGTTTAAAAGTCATGTCGCAAATGGATATTTCAGAGAAACGTATTCCTCAAGATGGGCGGATCAAACTTAAACTGTC
TAAAACCAAAGCTATTGATTTTCGTGTGAACTCACTTCCAACATTGTTTGGTGAAAAATTAGTTCTGCGTATTCTTGATC
CTTCCAGTGCCATGTTAGGGATTGATGCTTTGGGCTATGAAGAAGATCAAAAAGCTTTATTTATGGAAGCACTAGAAAGA
CCACAAGGCATGTTATTGATTACCGGTCCAACAGGTTCTGGTAAAACCGTATCTTTATATACTGGCTTAAATATCCTCAA
CACCGAAAGTTCCAATATTTCAACCGCAGAAGACCCTGTGGAGATTAATTTGGAGGGGATTAACCAAGTAAACGTCAATC
TTAAAGCAGGATTGACCTTTTCAGTCGCGCTAAAATCATTTCTTCGTCAAGATCCAGATATTATAATGGTCGGGGAGATT
CGAGACCTTGAAACGGCTGAAATTGCAATCAAAGCAGCCCAAACAGGTCATATGGTGATGTCCACACTGCATACCAATAG
TGCACCAGAAACCTTGACCCGATTGCGCAATATGGGTGTGCCATCCTTCAATATTGCAACATCGGTCAATCTTGTGATTG
CACAACGTCTTGCTCGACGTTTATGCAACCACTGTAAAGCACCTATTGAAATTCCGAAACAAAGTTTGTTAGAACTGGGC
TTTACTGAACAAGACTTAAACCATCCTGATTTACAGATTTTTCAGCCTATGGGCTGTTCTGAATGTAGAGAAGGTTATAA
AGGACGAGTCGGTATTTATGAGGTGATGAAAGTAACACCTGAAATTTCAAAAATTATCATGGAAGATGGCAACGCACTAC
AAATTGCAGCAGCATCTGAGAAATTGGGGTTTGATAATTTACGACGTTCAGGTTTAAAAAAGGTTATGAATGGTTTAACG
TCTTTACAAGAAATCAACCGTGTAACCAGTGAATAA

Domains

Predicted by InterproScan.

Type II/IV secretion system protein (T2SSE)

(193-460)

Type II secretion system (T2SS), protein E, N-terminal domain (MshEN)

(17-147)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilB Acinetobacter baumannii D1279779

80.245

100

0.804
  pilB Acinetobacter baylyi ADP1

75.657

100

0.757
  pilB Legionella pneumophila strain ERS1305867

50.957

100

0.513
  pilF Neisseria gonorrhoeae MS11

49.296

99.475

0.49
  pilB Vibrio cholerae strain A1552

48.925

97.723

0.478
  pilB Vibrio parahaemolyticus RIMD 2210633

48.833

97.548

0.476
  pilB Vibrio campbellii strain DS40M4

47.756

97.548

0.466
  pilB/pilB1 Synechocystis sp. PCC 6803

34.641

100

0.371
  pilF Thermus thermophilus HB27

36.458

100

0.368
  pilB Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

37.319

96.673

0.361