Detailed information NTG0823023

Bioinformatically predicted

Overview

• Name: comA
• Type: Machinery gene
• Locus tag: QG303_RS01295
• Genome accession: NZ_CP123909
• Coordinates: 280400..282634 (-)
• Length: 744 a.a.
• NCBI ID: WP_281120669.1
• Uniprot ID: -
• Organism: Pseudomonas atacamensis strain MGMM4
• Function: ssDNA transport through the inner membrane (predicted from homology) DNA binding and uptake

Genomic Context

Location: 275400..287634

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
QG303_RS01260 (QG303_01260)	murB	275778..276797 (-)	1020	WP_281120667.1	UDP-N-acetylmuramate dehydrogenase	-
QG303_RS01265 (QG303_01265)	-	276794..277258 (-)	465	WP_125917273.1	low molecular weight protein-tyrosine-phosphatase	-
QG303_RS01270 (QG303_01270)	kdsB	277258..278022 (-)	765	WP_071173223.1	3-deoxy-manno-octulosonate cytidylyltransferase	-
QG303_RS01275 (QG303_01275)	-	278019..278204 (-)	186	WP_003179363.1	Trm112 family protein	-
QG303_RS01280 (QG303_01280)	lpxK	278228..279238 (-)	1011	WP_281120668.1	tetraacyldisaccharide 4'-kinase	-
QG303_RS01285 (QG303_01285)	-	279238..279666 (-)	429	WP_130911827.1	biopolymer transporter ExbD	-
QG303_RS01290 (QG303_01290)	exbB	279663..280298 (-)	636	WP_016771007.1	MotA/TolQ/ExbB proton channel family protein	Machinery gene
QG303_RS01295 (QG303_01295)	comA	280400..282634 (-)	2235	WP_281120669.1	DNA internalization-related competence protein ComEC/Rec2	Machinery gene
QG303_RS01300 (QG303_01300)	-	282771..283289 (+)	519	WP_016770668.1	DUF2062 domain-containing protein	-
QG303_RS01305 (QG303_01305)	-	283441..284220 (-)	780	WP_039760202.1	ABC transporter permease	-
QG303_RS01310 (QG303_01310)	-	284217..285149 (-)	933	WP_095181611.1	ABC transporter ATP-binding protein	-
QG303_RS01315 (QG303_01315)	-	285283..285906 (-)	624	WP_024013937.1	glutathione S-transferase	-
QG303_RS01320 (QG303_01320)	-	285950..286609 (-)	660	WP_122700207.1	transglutaminase family protein	-

Sequence

Protein

• Length: 744 a.a.
• Molecular weight: 81727.73 Da
• Isoelectric Point: 9.3361

>NTDB_id=823023 QG303_RS01295 WP_281120669.1 280400..282634(-) (comA) [Pseudomonas atacamensis strain MGMM4]
MRTGMMALAVGLLAPVFLPALPPVGLLVVLPAVALMLLPFRSYPLAFLLFGFTWACFSAQWALTDRLPPSLDGETRWLEG
QVVGLPQHNDGVVRFELADARSRHEKLPSLLRLAWYAGPAVNSGERWRLAVKLKRPSGLLNPDAFDYEAWLLAQRIGATG
TIKDGQRLAEARYAWRDGVRQRLLAADAQGREGALAALVLGDGSGLSREDWQVLQDTGTVHLLVISGQHIGLLAAVMYLL
VAGLARFGIWPLRWPWLPWACGLAFAAALGYGLLAGFDVPVQRACVMVTLVLLWRLRFRHLGAWWPLLLAFNGVLLLDPL
ASLRPGFWLSFAAVAVLIFTFGGRLGAWRWWQTWTRAQWLIAIGLCPVLLALSLPISVSGPVANLLAVPWVSLVVLPPAL
LGTLLLPVPYVGEGLLWLAGGLIDWLFIGLALIAGQWPAWIPAAIPFWALVLGSLGAILLLLPRGVPMRPLGWPLLLLLA
LTPQERIEEGRADVWQLDVGQGLAILVRTRHHALLYDAGPRFGEFDLGERVVLPALRKLNVQALDLMLLSHADADHAGGA
RAVMQGLKVHRVVSGDVPNLPPELNAEACASGEQWQWDGVQFQLWQWSAADDSNQRSCVLQIEANGERLLLTGDIDTHAE
RVLLDSPLAVPTQWLQSPHHGSRSSSSMALLKALQPEAVLISRGHGNSFGHPHPTVLARYRKQGLRIYDSAEHGAIHLQL
GSFKPPWTMRQQRRFWRDPPVAGR

Nucleotide

• Length: 2235 bp

>NTDB_id=823023 QG303_RS01295 WP_281120669.1 280400..282634(-) (comA) [Pseudomonas atacamensis strain MGMM4]
ATGCGCACAGGGATGATGGCGCTGGCAGTCGGTCTGCTGGCCCCGGTTTTTTTGCCGGCCTTGCCGCCGGTCGGCTTGCT
GGTAGTGCTGCCAGCGGTGGCGCTGATGCTGCTGCCGTTTCGCAGCTATCCATTGGCTTTTTTGCTGTTTGGTTTCACGT
GGGCTTGTTTCAGTGCGCAGTGGGCGCTGACTGACCGCTTGCCACCGAGTCTGGACGGCGAGACCCGTTGGCTTGAAGGG
CAAGTGGTCGGCTTGCCGCAACACAACGATGGCGTGGTGCGTTTCGAGCTGGCTGATGCGCGTTCACGCCACGAAAAGCT
GCCATCGCTGCTGCGCCTGGCCTGGTACGCCGGGCCGGCGGTGAATAGTGGTGAGCGTTGGCGTCTGGCGGTGAAATTGA
AGCGCCCGAGTGGCTTGCTCAACCCGGACGCCTTCGATTACGAGGCCTGGCTGCTGGCGCAGCGGATCGGGGCGACCGGC
ACGATCAAGGATGGCCAGCGCCTGGCTGAGGCCCGGTATGCATGGCGCGACGGCGTTCGCCAGCGCCTGCTGGCGGCCGA
TGCACAAGGACGAGAGGGCGCGCTGGCGGCGCTGGTGCTTGGTGACGGTTCAGGCCTCAGTCGCGAGGATTGGCAGGTGC
TGCAAGACACCGGCACCGTGCATTTGCTGGTGATCTCCGGCCAGCACATCGGCTTGCTCGCCGCAGTGATGTATCTGCTG
GTCGCCGGGCTGGCGCGTTTCGGAATCTGGCCGTTGCGCTGGCCATGGCTGCCGTGGGCGTGTGGCCTGGCCTTCGCGGC
GGCGCTGGGTTACGGCTTGCTCGCAGGCTTCGATGTGCCGGTGCAGCGCGCCTGCGTGATGGTGACGCTGGTGCTGCTGT
GGCGCCTGCGTTTTCGTCATCTCGGCGCGTGGTGGCCGTTGCTGCTGGCATTCAATGGCGTGCTGCTGCTTGATCCGCTG
GCCAGTTTGCGTCCGGGTTTCTGGCTGTCCTTCGCGGCGGTGGCAGTGTTGATCTTCACCTTCGGCGGTCGGCTGGGGGC
CTGGCGCTGGTGGCAGACCTGGACCCGCGCGCAGTGGCTGATCGCGATAGGCTTGTGCCCGGTGTTGCTGGCGCTGAGCT
TGCCCATCAGCGTCAGCGGGCCTGTAGCCAATCTGCTGGCGGTACCGTGGGTCAGCCTCGTGGTGTTGCCGCCGGCATTG
CTCGGCACGCTATTGCTGCCCGTGCCTTATGTTGGCGAAGGACTGTTGTGGCTGGCCGGTGGTTTGATCGACTGGCTGTT
TATCGGGCTGGCGCTGATTGCCGGGCAATGGCCGGCGTGGATACCGGCCGCCATTCCATTTTGGGCGTTGGTCCTGGGCA
GCCTTGGCGCGATTTTATTGCTGTTGCCCCGTGGCGTGCCGATGCGTCCATTGGGCTGGCCGCTGCTGTTGCTCTTGGCA
CTGACGCCTCAAGAGCGAATAGAAGAAGGGCGGGCCGATGTCTGGCAACTCGACGTCGGCCAAGGCTTGGCCATCCTTGT
TCGCACCCGCCATCACGCGCTTCTCTATGACGCCGGCCCGCGTTTCGGCGAGTTCGATCTCGGCGAGCGAGTGGTGTTGC
CAGCGTTACGCAAACTCAACGTGCAAGCGCTCGACTTGATGCTGCTCAGCCACGCTGACGCCGATCACGCTGGCGGCGCC
CGGGCGGTAATGCAGGGATTGAAGGTGCACCGCGTGGTCAGCGGCGATGTGCCAAACCTGCCGCCGGAGCTGAACGCCGA
AGCCTGCGCAAGTGGCGAACAGTGGCAGTGGGATGGCGTGCAGTTCCAGCTTTGGCAATGGTCGGCGGCCGATGACAGTA
ACCAGCGTTCCTGCGTATTGCAGATCGAGGCCAACGGCGAACGCCTGTTGCTCACTGGCGATATCGACACTCACGCCGAG
CGCGTCCTGCTCGACAGCCCGCTGGCCGTGCCGACGCAGTGGCTGCAATCGCCCCATCACGGCAGCCGCAGTTCATCATC
GATGGCCCTGCTCAAAGCCTTGCAGCCCGAAGCGGTGCTGATCTCCCGTGGCCACGGCAACTCCTTCGGTCATCCGCATC
CAACCGTGCTGGCGCGCTACCGCAAGCAAGGTCTGCGCATCTACGACAGCGCCGAGCACGGTGCCATTCATCTGCAATTG
GGCAGCTTCAAACCGCCGTGGACGATGCGTCAACAGCGGCGTTTCTGGCGCGATCCACCGGTGGCTGGCCGTTGA

Domains

Predicted by InterproScan.

• Domain of unknown function (DUF4131) (DUF4131) (24-167)

• Competence protein (Competence) (198-464)

• Metallo-beta-lactamase superfamily (Lactamase_B) (498-685)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
comA	Pseudomonas stutzeri DSM 10701	62.865	96.64	0.608
comA	Ralstonia pseudosolanacearum GMI1000	35.476	100	0.371