Detailed information    

insolico Bioinformatically predicted

Overview

Name   exbB   Type   Machinery gene
Locus tag   QG303_RS01290 Genome accession   NZ_CP123909
Coordinates   279663..280298 (-) Length   211 a.a.
NCBI ID   WP_016771007.1    Uniprot ID   A0AAU7ERB8
Organism   Pseudomonas atacamensis strain MGMM4     
Function   ssDNA transport through the inner membrane (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 274663..285298
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QG303_RS01255 (QG303_01255) - 275008..275478 (-) 471 WP_281120666.1 (2Fe-2S)-binding protein -
  QG303_RS01260 (QG303_01260) murB 275778..276797 (-) 1020 WP_281120667.1 UDP-N-acetylmuramate dehydrogenase -
  QG303_RS01265 (QG303_01265) - 276794..277258 (-) 465 WP_125917273.1 low molecular weight protein-tyrosine-phosphatase -
  QG303_RS01270 (QG303_01270) kdsB 277258..278022 (-) 765 WP_071173223.1 3-deoxy-manno-octulosonate cytidylyltransferase -
  QG303_RS01275 (QG303_01275) - 278019..278204 (-) 186 WP_003179363.1 Trm112 family protein -
  QG303_RS01280 (QG303_01280) lpxK 278228..279238 (-) 1011 WP_281120668.1 tetraacyldisaccharide 4'-kinase -
  QG303_RS01285 (QG303_01285) - 279238..279666 (-) 429 WP_130911827.1 biopolymer transporter ExbD -
  QG303_RS01290 (QG303_01290) exbB 279663..280298 (-) 636 WP_016771007.1 MotA/TolQ/ExbB proton channel family protein Machinery gene
  QG303_RS01295 (QG303_01295) comA 280400..282634 (-) 2235 WP_281120669.1 DNA internalization-related competence protein ComEC/Rec2 Machinery gene
  QG303_RS01300 (QG303_01300) - 282771..283289 (+) 519 WP_016770668.1 DUF2062 domain-containing protein -
  QG303_RS01305 (QG303_01305) - 283441..284220 (-) 780 WP_039760202.1 ABC transporter permease -
  QG303_RS01310 (QG303_01310) - 284217..285149 (-) 933 WP_095181611.1 ABC transporter ATP-binding protein -

Sequence

Protein


Download         Length: 211 a.a.        Molecular weight: 22913.06 Da        Isoelectric Point: 6.8770

>NTDB_id=823022 QG303_RS01290 WP_016771007.1 279663..280298(-) (exbB) [Pseudomonas atacamensis strain MGMM4]
MWELVKSGGWMMLPIILSSIAAMAIVAERLWTLRASRVTPEHLLGQVWVWIKDKQLNKEKLKELRANSPLGEILAAGLAN
SKHGREIMKECIEEAAARVIHELERYINALGTIAAMAPLLGLLGTVLGMIDIFSAFTGSGMTTNASVLAGGISKALITTA
AGLMVGIPAVFFHRFLQRRIDELVVGMEQEAIKLVEVVQGDRDVDLAEGKA

Nucleotide


Download         Length: 636 bp        

>NTDB_id=823022 QG303_RS01290 WP_016771007.1 279663..280298(-) (exbB) [Pseudomonas atacamensis strain MGMM4]
GTGTGGGAATTGGTCAAATCCGGCGGCTGGATGATGTTGCCGATCATTCTGAGTTCCATCGCGGCCATGGCGATCGTCGC
CGAGCGCCTGTGGACACTGCGCGCCAGTCGCGTCACCCCCGAGCATCTGCTGGGTCAGGTCTGGGTCTGGATCAAGGACA
AGCAGCTCAACAAGGAAAAACTCAAGGAATTGCGCGCCAACTCGCCGCTGGGGGAAATCCTCGCCGCAGGCCTGGCCAAT
TCCAAGCATGGTCGCGAGATCATGAAAGAGTGCATCGAAGAGGCCGCCGCGCGGGTCATTCATGAACTCGAGCGCTACAT
CAACGCGCTCGGCACCATCGCCGCCATGGCGCCGTTGCTCGGCCTGCTCGGCACCGTGCTGGGCATGATCGACATTTTCA
GTGCCTTCACCGGGTCCGGCATGACCACCAATGCTTCGGTACTGGCCGGCGGTATTTCCAAAGCGCTGATCACGACCGCA
GCGGGCCTGATGGTCGGGATTCCAGCGGTGTTCTTCCACCGGTTTTTGCAGCGCCGCATCGACGAGCTGGTGGTCGGTAT
GGAGCAGGAAGCGATCAAACTGGTGGAAGTGGTGCAGGGCGACCGGGATGTCGATCTGGCCGAGGGCAAAGCGTGA

Domains

Predicted by InterproScan.

MotA/TolQ/ExbB proton channel family (MotA_ExbB)

(66-188)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  exbB Pseudomonas stutzeri DSM 10701

85.782

100

0.858