Detailed information NTG0822836

Bioinformatically predicted

Overview

• Name: pilD
• Type: Machinery gene
• Locus tag: QG728_RS07045
• Genome accession: NZ_CP123854
• Coordinates: 1463742..1464602 (+)
• Length: 286 a.a.
• NCBI ID: WP_001152273.1
• Uniprot ID: A0A836M4G0
• Organism: Acinetobacter baumannii strain WB4
• Function: assembly of type IV pilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 1458742..1469602

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
QG728_RS07025 (QG728_07025)	secG	1459347..1459676 (-)	330	WP_000555570.1	preprotein translocase subunit SecG	-
QG728_RS07030 (QG728_07030)	tpiA	1459689..1460483 (-)	795	WP_262094289.1	triose-phosphate isomerase	-
QG728_RS07035 (QG728_07035)	pilB	1460774..1462486 (+)	1713	WP_001274991.1	type IV-A pilus assembly ATPase PilB	Machinery gene
QG728_RS07040 (QG728_07040)	pilC	1462516..1463742 (+)	1227	WP_000279216.1	type II secretion system F family protein	Machinery gene
QG728_RS07045 (QG728_07045)	pilD	1463742..1464602 (+)	861	WP_001152273.1	A24 family peptidase	Machinery gene
QG728_RS07050 (QG728_07050)	coaE	1464604..1465200 (+)	597	WP_000874125.1	dephospho-CoA kinase	-
QG728_RS07055 (QG728_07055)	-	1465197..1466111 (-)	915	WP_272420443.1	DMT family transporter	-
QG728_RS07060 (QG728_07060)	rlmB	1466147..1466896 (-)	750	WP_001118149.1	23S rRNA (guanosine(2251)-2'-O)-methyltransferase RlmB	-
QG728_RS07065 (QG728_07065)	-	1466998..1467324 (-)	327	WP_000099685.1	pyrimidine/purine nucleoside phosphorylase	-
QG728_RS07070 (QG728_07070)	-	1467401..1468711 (-)	1311	WP_005112390.1	tetratricopeptide repeat protein	-

Sequence

Protein

• Length: 286 a.a.
• Molecular weight: 32088.53 Da
• Isoelectric Point: 7.1041

>NTDB_id=822836 QG728_RS07045 WP_001152273.1 1463742..1464602(+) (pilD) [Acinetobacter baumannii strain WB4]
MQDIIAYFIQNLTALYIAVALVSLCIGSFLNVVIYRTPKMMEQDWQQECQMLLNPEQPIIDHEKLTLSKPASSCPACQQP
IRWYQNIPVISWLMLRGKCGHCQHPISIRYPAIELLTMLCSLVVVMVFGPTIQMLFGLVLTWVLIALTFIDFDTQLLPDR
FTLPLAALGLGINTFNIYTSPNSAIWGYLIGFLCLWIVYYLFKVITGKEGMGYGDFKLLAALGAWMGPLMLPLIVLLSSL
LGAIIGIILLKLRNDNQPFAFGPYIAIAGWVAFLWGDQIMKIYLGG

Nucleotide

• Length: 861 bp

>NTDB_id=822836 QG728_RS07045 WP_001152273.1 1463742..1464602(+) (pilD) [Acinetobacter baumannii strain WB4]
ATGCAAGACATCATTGCGTATTTTATTCAAAACTTAACTGCACTTTATATTGCTGTTGCACTCGTGAGCCTATGTATCGG
TAGCTTTCTTAATGTAGTGATTTACCGCACGCCAAAAATGATGGAGCAAGATTGGCAGCAAGAATGCCAAATGTTACTCA
ATCCTGAGCAACCGATTATCGATCATGAGAAGTTAACTTTAAGTAAGCCTGCTTCATCGTGCCCTGCATGTCAGCAACCG
ATCCGTTGGTATCAAAATATTCCTGTTATAAGCTGGCTTATGTTAAGAGGAAAGTGTGGCCATTGCCAGCACCCGATTAG
TATTCGCTATCCAGCCATCGAACTACTCACCATGCTATGTTCATTAGTAGTAGTCATGGTATTTGGCCCAACCATACAAA
TGCTTTTTGGACTAGTCCTCACATGGGTACTGATAGCCCTTACCTTTATTGATTTCGATACACAATTATTGCCTGATCGC
TTTACCCTACCTTTAGCTGCGCTCGGCTTAGGTATTAATACCTTTAATATTTATACCTCACCCAACTCAGCCATTTGGGG
TTATCTCATTGGTTTCCTATGTCTTTGGATTGTCTATTACTTATTTAAAGTGATCACTGGCAAAGAAGGTATGGGCTACG
GCGACTTTAAATTGCTTGCAGCATTAGGTGCATGGATGGGGCCATTGATGCTGCCGTTAATTGTGTTATTGTCATCGTTA
CTTGGCGCAATCATTGGCATCATTTTATTAAAATTAAGAAATGACAATCAGCCTTTTGCTTTTGGGCCATATATTGCCAT
TGCTGGTTGGGTTGCCTTTTTATGGGGTGATCAGATTATGAAAATTTATTTGGGAGGTTAA

Domains

Predicted by InterproScan.

• Bacterial Peptidase A24 N-terminal domain (A24_N_bact) (22-128)

• Type IV leader peptidase family (Peptidase_A24) (138-247)

3D structure

• AlphaFold DB: A0A836M4G0

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilD	Acinetobacter baumannii D1279779	98.951	100	0.99
pilD	Acinetobacter nosocomialis M2	98.601	100	0.986
pilD	Vibrio cholerae strain A1552	54.044	95.105	0.514
pilD	Vibrio campbellii strain DS40M4	52.92	95.804	0.507
pilD	Neisseria gonorrhoeae MS11	47.727	92.308	0.441