Detailed information    

insolico Bioinformatically predicted

Overview

Name   braR   Type   Regulator
Locus tag   R6Y88_RS16700 Genome accession   NZ_CP137687
Coordinates   3289648..3290343 (+) Length   231 a.a.
NCBI ID   WP_015483587.1    Uniprot ID   -
Organism   Bacillus subtilis strain YT-4     
Function   promote expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 3284648..3295343
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  R6Y88_RS16675 ytrB 3284676..3285554 (+) 879 WP_004398506.1 ABC transporter ATP-binding protein YtrB -
  R6Y88_RS16680 ytrC 3285548..3286534 (+) 987 WP_015483589.1 ABC transporter permease YtrC -
  R6Y88_RS16685 ytrD 3286564..3287541 (+) 978 WP_015483588.1 ABC transporter permease YtrD -
  R6Y88_RS16690 ytrE 3287556..3288251 (+) 696 WP_003229129.1 ABC transporter ATP-binding protein YtrE -
  R6Y88_RS16695 ytrF 3288241..3289551 (+) 1311 WP_015251399.1 ABC transporter permease YtrF -
  R6Y88_RS16700 braR 3289648..3290343 (+) 696 WP_015483587.1 two-component response regulator BceR Regulator
  R6Y88_RS16705 bceS 3290336..3291340 (+) 1005 WP_015384427.1 two-component sensor histidine kinase BceS -
  R6Y88_RS16710 bceA 3291442..3292203 (+) 762 WP_003229137.1 bacitracin ABC transporter ATP-binding protein BceA -
  R6Y88_RS16715 bceB 3292193..3294133 (+) 1941 WP_015384426.1 bacitracin ABC transporter permease BceB -
  R6Y88_RS16720 yttA 3294170..3294916 (-) 747 WP_015483586.1 LMBR1 domain-containing protein -

Sequence

Protein


Download         Length: 231 a.a.        Molecular weight: 26921.82 Da        Isoelectric Point: 5.3731

>NTDB_id=822835 R6Y88_RS16700 WP_015483587.1 3289648..3290343(+) (braR) [Bacillus subtilis strain YT-4]
MFKLLLIEDDESLFHEIKDRLTGWSYDVYGIQDFSQVLQEFAAVNPDCVIIDVQLPKFDGFHWCRLIRSRSNVPILFLSS
RDHPADMVMSMQLGADDFIQKPFHFDVLIAKIQAMFRRVHHYNTEPNTIKTWCGAAVDAEQNLVSNDKGSVELTKNEMFI
LKQLIEQKNKIVSREELIRSLWNDERFVSDNTLTVNVNRLRKKLDVLQLGAYIETKVGQGYIAKEEDKFYD

Nucleotide


Download         Length: 696 bp        

>NTDB_id=822835 R6Y88_RS16700 WP_015483587.1 3289648..3290343(+) (braR) [Bacillus subtilis strain YT-4]
TTGTTTAAACTTTTGCTGATTGAAGATGATGAATCGCTGTTTCATGAAATCAAGGATCGTTTAACGGGATGGTCCTATGA
TGTATACGGCATTCAGGATTTCAGTCAGGTGCTGCAGGAATTTGCGGCGGTTAATCCTGATTGTGTCATTATTGATGTAC
AGCTGCCTAAATTTGACGGCTTTCATTGGTGCCGGCTGATCCGCTCCCGGTCAAATGTTCCGATTCTCTTTTTATCCTCC
CGGGATCATCCTGCTGATATGGTGATGTCCATGCAGCTCGGGGCAGATGACTTTATTCAAAAGCCATTTCATTTTGATGT
GCTGATCGCGAAAATCCAAGCGATGTTCCGGCGTGTGCACCATTATAATACGGAGCCGAATACGATTAAAACGTGGTGCG
GCGCTGCTGTAGACGCGGAGCAGAATCTCGTCAGCAATGACAAAGGATCTGTTGAACTGACCAAAAATGAAATGTTCATT
CTAAAACAATTAATAGAGCAAAAAAACAAGATCGTCAGCCGGGAAGAGCTGATCAGAAGCTTGTGGAACGATGAGCGTTT
TGTTAGTGATAATACGCTGACCGTCAATGTCAATCGCCTGCGAAAAAAACTGGACGTCCTGCAGCTTGGTGCATATATCG
AGACAAAGGTGGGCCAGGGCTACATCGCGAAGGAAGAGGACAAGTTCTATGATTAA

Domains

Predicted by InterProScan.

Transcriptional regulatory protein, C terminal (Trans_reg_C)

(150-222)

Response regulator receiver domain (Response_reg)

(5-113)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  braR Staphylococcus aureus N315

39.545

95.238

0.377