Detailed information    

insolico Bioinformatically predicted

Overview

Name   crp   Type   Regulator
Locus tag   QG728_RS02895 Genome accession   NZ_CP123854
Coordinates   588577..589284 (+) Length   235 a.a.
NCBI ID   WP_000203218.1    Uniprot ID   -
Organism   Acinetobacter baumannii strain WB4     
Function   regulate competence development (predicted from homology)   
Competence regulation

Genomic Context

Location: 583577..594284
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QG728_RS02875 (QG728_02875) - 586395..587201 (+) 807 WP_025467869.1 peptidoglycan DD-metalloendopeptidase family protein -
  QG728_RS02880 (QG728_02880) - 587198..587623 (-) 426 WP_001026233.1 GNAT family N-acetyltransferase -
  QG728_RS02885 (QG728_02885) - 587717..588139 (-) 423 WP_001195082.1 OsmC family protein -
  QG728_RS02890 (QG728_02890) - 588218..588337 (-) 120 Protein_575 hypothetical protein -
  QG728_RS02895 (QG728_02895) crp 588577..589284 (+) 708 WP_000203218.1 cAMP-activated global transcriptional regulator CRP Regulator
  QG728_RS02900 (QG728_02900) - 589445..590494 (+) 1050 WP_001159800.1 NADP(H)-dependent aldo-keto reductase -
  QG728_RS02905 (QG728_02905) - 590553..591332 (-) 780 WP_001034598.1 M48 family metallopeptidase -
  QG728_RS02910 (QG728_02910) - 591449..591766 (-) 318 WP_000776215.1 hypothetical protein -
  QG728_RS02915 (QG728_02915) - 591888..593207 (-) 1320 WP_000517794.1 adenylosuccinate synthase -

Sequence

Protein


Download         Length: 235 a.a.        Molecular weight: 26581.21 Da        Isoelectric Point: 4.6676

>NTDB_id=822824 QG728_RS02895 WP_000203218.1 588577..589284(+) (crp) [Acinetobacter baumannii strain WB4]
MTSNFSQLSTDALSPGQLPESVKALLKRAHINRYPKRTTIVDAGTESKSLYLILKGSVSIILREDDEREIVVAYLNPGDF
FGEMGLFEPNPQRTAEVRTRDVCEIAEISYDNFHELSKQYPDLSYAVFAQLVRRLKNTTRKMTDLAFIDVSGRIARCLID
LSSQPEAMILPNGRQIRITRQEIGRIVGCSREMVGRVLKTLEDQGMIQTDGKAILIFDTSLEETPVTDEDYDEEE

Nucleotide


Download         Length: 708 bp        

>NTDB_id=822824 QG728_RS02895 WP_000203218.1 588577..589284(+) (crp) [Acinetobacter baumannii strain WB4]
ATGACTTCAAATTTTTCACAACTCAGCACAGATGCTTTATCTCCGGGGCAACTACCTGAATCCGTTAAAGCATTGTTAAA
ACGTGCTCACATCAACAGATATCCAAAACGAACCACAATTGTTGATGCCGGAACAGAGTCAAAATCTTTATATTTAATTT
TAAAAGGCTCAGTTTCAATTATTTTACGTGAAGACGATGAACGTGAAATTGTTGTGGCATATTTGAATCCTGGTGACTTC
TTTGGGGAAATGGGGCTTTTCGAACCGAACCCTCAACGTACAGCTGAAGTTCGTACCCGTGATGTCTGTGAAATTGCGGA
AATTTCATATGACAACTTCCACGAACTGAGCAAACAGTATCCAGATCTCAGCTATGCCGTTTTCGCGCAACTCGTTCGTC
GTTTAAAAAATACAACTCGTAAAATGACCGATCTTGCATTTATTGATGTGTCGGGCCGTATTGCGCGTTGCTTAATCGAC
CTATCTTCACAACCAGAAGCAATGATCTTGCCGAATGGCCGTCAAATTCGTATTACTCGACAAGAGATTGGACGCATTGT
CGGGTGTTCACGAGAAATGGTTGGCCGTGTATTAAAGACCTTAGAAGATCAAGGTATGATTCAAACTGACGGTAAAGCTA
TTCTAATTTTTGATACTTCATTAGAAGAAACCCCAGTCACTGACGAAGACTATGATGAAGAAGAATAA

Domains

Predicted by InterproScan.

Crp-like helix-turn-helix domain (HTH_Crp_2)

(152-218)

Cyclic nucleotide-binding domain (cNMP_binding)

(33-120)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  crp Acinetobacter baumannii D1279779

100

100

1
  crp Vibrio cholerae strain A1552

47.343

88.085

0.417
  crp Haemophilus influenzae Rd KW20

48.705

82.128

0.4