Detailed information NTG0822655

Bioinformatically predicted

Overview

• Name: comA
• Type: Machinery gene
• Locus tag: QCD61_RS19765
• Genome accession: NZ_CP123771
• Coordinates: 4567757..4570003 (-)
• Length: 748 a.a.
• NCBI ID: WP_280944307.1
• Uniprot ID: -
• Organism: Pseudomonas viciae strain YsS1
• Function: ssDNA transport through the inner membrane (predicted from homology) DNA binding and uptake

Genomic Context

Location: 4562757..4575003

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
QCD61_RS19730 (QCD61_19730)	murB	4563140..4564159 (-)	1020	WP_265072291.1	UDP-N-acetylmuramate dehydrogenase	-
QCD61_RS19735 (QCD61_19735)	-	4564156..4564620 (-)	465	WP_135846480.1	low molecular weight protein-tyrosine-phosphatase	-
QCD61_RS19740 (QCD61_19740)	kdsB	4564620..4565384 (-)	765	WP_256453544.1	3-deoxy-manno-octulosonate cytidylyltransferase	-
QCD61_RS19745 (QCD61_19745)	-	4565381..4565566 (-)	186	WP_003179363.1	Trm112 family protein	-
QCD61_RS19750 (QCD61_19750)	lpxK	4565590..4566600 (-)	1011	WP_135846482.1	tetraacyldisaccharide 4'-kinase	-
QCD61_RS19755 (QCD61_19755)	-	4566600..4567028 (-)	429	WP_135846483.1	biopolymer transporter ExbD	-
QCD61_RS19760 (QCD61_19760)	exbB	4567025..4567660 (-)	636	WP_178084272.1	MotA/TolQ/ExbB proton channel family protein	Machinery gene
QCD61_RS19765 (QCD61_19765)	comA	4567757..4570003 (-)	2247	WP_280944307.1	DNA internalization-related competence protein ComEC/Rec2	Machinery gene
QCD61_RS19770 (QCD61_19770)	-	4570149..4570664 (+)	516	WP_135846486.1	DUF2062 domain-containing protein	-
QCD61_RS19775 (QCD61_19775)	-	4570829..4571608 (-)	780	WP_135846487.1	ABC transporter permease	-
QCD61_RS19780 (QCD61_19780)	-	4571605..4572537 (-)	933	WP_135846488.1	ABC transporter ATP-binding protein	-
QCD61_RS19785 (QCD61_19785)	-	4572671..4573294 (-)	624	WP_135846489.1	glutathione S-transferase	-
QCD61_RS19790 (QCD61_19790)	-	4573339..4573998 (-)	660	WP_135846490.1	transglutaminase family protein	-

Sequence

Protein

• Length: 748 a.a.
• Molecular weight: 81229.22 Da
• Isoelectric Point: 10.2037

>NTDB_id=822655 QCD61_RS19765 WP_280944307.1 4567757..4570003(-) (comA) [Pseudomonas viciae strain YsS1]
MRTGLVAFALGLLAPGFLPALPPFWLIATMPVLGLMVLPFRTYPLGFFLFGLAWACLSAQLALADRLPAALDGETRWVEG
RVVGLPQHSEDVVRFELADARSRRTRLPTSMRLAWFGGPPVSSGERWRLAVKLKRPAGLLNPHGFDYEAWLLSRGIGATG
TVKDGLRLQAAQGAWRDGVRQALAQVDAHGRSGALAALVLGDGSGLSREDWQVLQDTGTVHLLVISGQHIGLLAGLVYLL
VAGAARYGLWPVGLPWLPWACALAFAAALGYGFLAGFEVPVRRACAMIGLVLLWRLRFKHPDPWWAWLLAFVGVLVFDPL
ASLRPGFWLSFAAVAILMFTFGARLGPWRWWQTWTRAQWLVALGLCPLLVILGLPVSLSGPLVNLLAVPWISLLVLPPAL
LGTALLPVPLLGEGLLWIAGGLLDWLFKGLALVAGRMPAWVPVSIPLWAWCIAALGAFLLLLPKGVPLRVLGWPMLLLMV
FPPRESVPQGHAEIWHLDVGQGLAVLVRTRRHSLLYDAGPRFGEADAGERVVLPTLRKLGVQALDLMLLSHADADHAGGA
RAVRSGLPTRRVISGDPAALPDELQAGACDSGEGWEWDGVRFQLWQWSAARESNQKSCVLLVEAGGERLLLTGDIDSHAE
QALLDGPLAAPSQWLAAPHHGSRSSSSMALLARLNPHSVLISRGQGNAFGHPHPRVIARYRRLGLAIYDSAEQGAIRLQL
GAFEPPFTQARQRRYWRDPPPVGPQAKH

Nucleotide

• Length: 2247 bp

>NTDB_id=822655 QCD61_RS19765 WP_280944307.1 4567757..4570003(-) (comA) [Pseudomonas viciae strain YsS1]
ATGCGCACAGGGTTGGTCGCGTTTGCACTGGGGCTGTTGGCCCCGGGTTTTTTACCGGCATTGCCGCCGTTTTGGCTGAT
TGCAACCATGCCGGTGCTGGGGTTGATGGTGTTGCCGTTTCGCACCTACCCGCTGGGTTTTTTTCTGTTCGGGTTGGCCT
GGGCCTGCCTGTCGGCGCAGTTGGCATTGGCCGACCGGTTACCTGCCGCGCTCGATGGCGAAACCCGCTGGGTCGAAGGG
CGTGTCGTCGGCTTGCCGCAGCACAGCGAGGACGTGGTGCGTTTCGAACTGGCCGATGCCCGTTCGCGTCGCACCCGGCT
ACCGACGTCGATGCGTCTGGCCTGGTTCGGTGGTCCGCCCGTCAGCAGCGGCGAGCGATGGCGATTGGCTGTGAAGCTCA
AACGGCCGGCCGGATTACTGAACCCACACGGTTTCGACTATGAAGCCTGGCTGTTGAGCCGAGGCATCGGGGCGACCGGC
ACGGTGAAGGATGGCCTTCGTCTGCAAGCGGCCCAAGGTGCGTGGCGCGACGGCGTGCGACAGGCTCTGGCCCAAGTGGA
TGCCCACGGGCGCTCCGGTGCGCTGGCGGCCTTGGTGCTTGGCGACGGCAGCGGGCTGAGCCGCGAAGATTGGCAGGTAC
TGCAAGACACTGGCACCGTCCATTTACTGGTGATTTCCGGGCAGCACATCGGGCTGCTCGCCGGTCTGGTGTACCTGCTG
GTGGCCGGTGCGGCGCGTTATGGGCTGTGGCCGGTGGGTCTGCCGTGGTTGCCTTGGGCTTGTGCGCTGGCCTTCGCCGC
AGCCCTGGGCTACGGCTTTCTCGCTGGGTTCGAGGTGCCGGTGCGGCGGGCTTGCGCGATGATCGGCCTGGTGCTCCTCT
GGCGCTTGCGCTTCAAACACCCGGACCCCTGGTGGGCATGGCTGCTGGCCTTTGTCGGGGTGCTGGTGTTCGATCCGCTG
GCCAGCCTGCGGCCGGGGTTCTGGCTGTCGTTTGCGGCGGTGGCGATATTGATGTTCACCTTTGGCGCTCGCCTGGGGCC
CTGGCGCTGGTGGCAAACCTGGACCCGTGCCCAATGGCTGGTTGCGCTCGGCCTGTGTCCGTTACTGGTGATATTGGGCT
TGCCGGTCAGCCTCAGCGGGCCGCTGGTAAATCTGCTGGCGGTGCCCTGGATCAGCCTGTTGGTGTTGCCGCCGGCGTTG
CTCGGCACGGCGTTGTTGCCGGTGCCGTTGCTCGGTGAAGGGCTGCTGTGGATAGCCGGTGGCTTGCTCGATTGGCTGTT
CAAGGGGCTGGCGCTGGTTGCCGGGCGGATGCCGGCATGGGTTCCTGTTTCGATTCCGCTCTGGGCCTGGTGTATTGCCG
CCCTCGGGGCTTTTTTGCTGCTGCTGCCCAAGGGGGTGCCGCTGCGGGTGCTGGGGTGGCCAATGCTGCTGCTGATGGTT
TTTCCACCGCGAGAAAGCGTGCCGCAAGGCCATGCCGAAATCTGGCACCTGGACGTCGGCCAAGGGCTTGCGGTGCTCGT
GCGCACCCGTCGCCATAGCCTGCTTTACGATGCCGGGCCGCGCTTCGGCGAGGCCGACGCGGGCGAGCGCGTCGTGCTGC
CGACGTTGCGCAAACTGGGGGTACAGGCGTTGGATCTGATGCTGCTCAGCCATGCCGACGCCGATCACGCCGGCGGCGCT
CGCGCGGTGCGCAGCGGGCTGCCAACGAGGCGGGTGATCAGCGGCGATCCTGCCGCGCTGCCTGATGAGCTGCAAGCCGG
AGCATGCGACAGCGGCGAAGGTTGGGAGTGGGACGGGGTCAGGTTCCAATTGTGGCAATGGTCCGCTGCCCGTGAAAGCA
ACCAGAAGTCCTGCGTCTTGCTGGTCGAGGCCGGCGGCGAGCGCTTGCTGCTGACTGGCGACATCGATAGTCATGCTGAA
CAGGCCTTGCTCGACGGGCCCCTGGCGGCCCCGAGCCAGTGGCTGGCCGCCCCGCATCATGGCAGTCGCAGCTCATCGTC
AATGGCGCTGCTGGCGCGTCTGAATCCTCATTCGGTGCTGATCTCCCGGGGGCAAGGCAACGCGTTCGGTCATCCGCATC
CCCGGGTGATCGCTCGTTACCGTCGGTTGGGCCTGGCGATCTACGACAGTGCCGAACAGGGCGCCATTCGTCTGCAACTG
GGGGCCTTTGAACCCCCCTTCACCCAGGCCAGGCAGCGGCGGTATTGGCGTGATCCGCCGCCTGTCGGGCCGCAGGCCAA
ACATTGA

Domains

Predicted by InterproScan.

• Competence protein (Competence) (198-464)

• Domain of unknown function (DUF4131) (DUF4131) (22-165)

• Metallo-beta-lactamase superfamily (Lactamase_B) (498-672)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
comA	Pseudomonas stutzeri DSM 10701	61.944	96.257	0.596
comA	Ralstonia pseudosolanacearum GMI1000	32.665	100	0.37