Detailed information    

insolico Bioinformatically predicted

Overview

Name   exbB   Type   Machinery gene
Locus tag   QCD61_RS19760 Genome accession   NZ_CP123771
Coordinates   4567025..4567660 (-) Length   211 a.a.
NCBI ID   WP_178084272.1    Uniprot ID   -
Organism   Pseudomonas viciae strain YsS1     
Function   ssDNA transport through the inner membrane (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 4562025..4572660
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QCD61_RS19725 (QCD61_19725) - 4562424..4562894 (-) 471 WP_135846478.1 (2Fe-2S)-binding protein -
  QCD61_RS19730 (QCD61_19730) murB 4563140..4564159 (-) 1020 WP_265072291.1 UDP-N-acetylmuramate dehydrogenase -
  QCD61_RS19735 (QCD61_19735) - 4564156..4564620 (-) 465 WP_135846480.1 low molecular weight protein-tyrosine-phosphatase -
  QCD61_RS19740 (QCD61_19740) kdsB 4564620..4565384 (-) 765 WP_256453544.1 3-deoxy-manno-octulosonate cytidylyltransferase -
  QCD61_RS19745 (QCD61_19745) - 4565381..4565566 (-) 186 WP_003179363.1 Trm112 family protein -
  QCD61_RS19750 (QCD61_19750) lpxK 4565590..4566600 (-) 1011 WP_135846482.1 tetraacyldisaccharide 4'-kinase -
  QCD61_RS19755 (QCD61_19755) - 4566600..4567028 (-) 429 WP_135846483.1 biopolymer transporter ExbD -
  QCD61_RS19760 (QCD61_19760) exbB 4567025..4567660 (-) 636 WP_178084272.1 MotA/TolQ/ExbB proton channel family protein Machinery gene
  QCD61_RS19765 (QCD61_19765) comA 4567757..4570003 (-) 2247 WP_280944307.1 DNA internalization-related competence protein ComEC/Rec2 Machinery gene
  QCD61_RS19770 (QCD61_19770) - 4570149..4570664 (+) 516 WP_135846486.1 DUF2062 domain-containing protein -
  QCD61_RS19775 (QCD61_19775) - 4570829..4571608 (-) 780 WP_135846487.1 ABC transporter permease -
  QCD61_RS19780 (QCD61_19780) - 4571605..4572537 (-) 933 WP_135846488.1 ABC transporter ATP-binding protein -

Sequence

Protein


Download         Length: 211 a.a.        Molecular weight: 22810.95 Da        Isoelectric Point: 8.0840

>NTDB_id=822654 QCD61_RS19760 WP_178084272.1 4567025..4567660(-) (exbB) [Pseudomonas viciae strain YsS1]
MWELVKSGGWMMLPIILSSIAALGIVAERLWTLRASRVTPEHLLGQVWVWIKDKQLNKDKLKELRASSPLGEILAAGLAN
SKHGREIMKECIEEAAARVIHELERYINALGTIAAMSPLLGLLGTVLGMIDIFSAFTGSGMTTNAAVLAGGISKALITTA
AGLMVGIPAVFFHRFLQRRVDELVVGMEQEAIKLVEVVQGDRDVDLAGGKK

Nucleotide


Download         Length: 636 bp        

>NTDB_id=822654 QCD61_RS19760 WP_178084272.1 4567025..4567660(-) (exbB) [Pseudomonas viciae strain YsS1]
GTGTGGGAATTGGTCAAATCCGGCGGCTGGATGATGTTGCCGATCATTCTGAGTTCCATCGCGGCACTGGGTATCGTTGC
CGAACGCCTGTGGACCCTGCGGGCCAGCCGCGTGACCCCGGAGCATCTGCTCGGGCAGGTCTGGGTCTGGATCAAGGACA
AGCAACTGAACAAGGACAAGCTCAAGGAGCTGCGGGCCAGTTCGCCCCTGGGGGAAATCCTCGCCGCGGGCCTGGCGAAC
TCCAAGCATGGTCGCGAGATCATGAAAGAGTGCATCGAGGAAGCCGCCGCCCGGGTCATCCATGAACTGGAGCGCTATAT
CAACGCCCTGGGCACCATCGCTGCCATGTCCCCCCTGTTGGGCCTTCTGGGTACGGTGCTGGGCATGATCGACATTTTCA
GCGCGTTCACCGGCTCCGGCATGACCACTAACGCTGCGGTGCTGGCGGGCGGTATTTCCAAGGCCTTGATCACCACCGCC
GCGGGCCTGATGGTGGGTATCCCTGCGGTGTTCTTCCATCGGTTCCTGCAACGACGCGTGGACGAACTGGTGGTGGGCAT
GGAACAGGAAGCCATCAAGCTGGTCGAGGTGGTGCAGGGCGATCGTGACGTGGACCTGGCCGGGGGCAAGAAGTGA

Domains

Predicted by InterproScan.

MotA/TolQ/ExbB proton channel family (MotA_ExbB)

(67-188)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  exbB Pseudomonas stutzeri DSM 10701

86.19

99.526

0.858