Detailed information    

insolico Bioinformatically predicted

Overview

Name   yaaT   Type   Regulator
Locus tag   R6U80_RS01965 Genome accession   NZ_CP137623
Coordinates   390963..391745 (+) Length   260 a.a.
NCBI ID   WP_023188991.1    Uniprot ID   -
Organism   Lactococcus lactis strain NCK401     
Function   accelerate the production of Spo0A~P (predicted from homology)   
Competence regulation

Genomic Context

Location: 385963..396745
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  R6U80_RS01940 (R6U80_01940) vicX 385989..386801 (-) 813 WP_003131583.1 MBL fold metallo-hydrolase Regulator
  R6U80_RS01945 (R6U80_01945) vicK 386970..388412 (-) 1443 WP_012897229.1 cell wall metabolism sensor histidine kinase WalK Regulator
  R6U80_RS01950 (R6U80_01950) yycF 388405..389106 (-) 702 WP_003131580.1 response regulator YycF -
  R6U80_RS01955 (R6U80_01955) tmk 389284..389919 (+) 636 WP_012897230.1 dTMP kinase -
  R6U80_RS01960 (R6U80_01960) - 390051..390911 (+) 861 WP_003131573.1 DNA polymerase III subunit delta' -
  R6U80_RS01965 (R6U80_01965) yaaT 390963..391745 (+) 783 WP_023188991.1 stage 0 sporulation family protein Regulator
  R6U80_RS01970 (R6U80_01970) yabA 391738..392064 (+) 327 WP_011675472.1 DNA replication initiation control protein YabA -
  R6U80_RS01975 (R6U80_01975) rsmI 392064..392939 (+) 876 WP_003131568.1 16S rRNA (cytidine(1402)-2'-O)-methyltransferase -
  R6U80_RS01980 (R6U80_01980) - 393016..393207 (-) 192 WP_012897234.1 hypothetical protein -
  R6U80_RS01985 (R6U80_01985) mvk 393270..394202 (-) 933 WP_003131564.1 mevalonate kinase -
  R6U80_RS01990 (R6U80_01990) mvaD 394508..395464 (+) 957 WP_023188990.1 diphosphomevalonate decarboxylase -
  R6U80_RS01995 (R6U80_01995) - 395451..396440 (+) 990 WP_012897236.1 mevalonate kinase -

Sequence

Protein


Download         Length: 260 a.a.        Molecular weight: 29817.30 Da        Isoelectric Point: 6.0566

>NTDB_id=822645 R6U80_RS01965 WP_023188991.1 390963..391745(+) (yaaT) [Lactococcus lactis strain NCK401]
MIYEIKFAHGESNVFAISDIELAPQTEVILRSDKGNFYGKIVREISEEANLEIHHTIVREVNEDDLQVIAKLEERSKQAK
DKVRQLIIEQGLEMKIIDVAYNFDQMQLFISFTAENRVDFRLLLRELATTFRIRIELRQIGPRDAAKIHGGLGPCGRPLC
CSEFVYEFPNVSIKMAKNQNLSLKQNKLNGLCGRLMCCLTYEDSFYKEAQQLFPDFGEFVTTSEGKGKVVGLNVLKNRVK
IRFGEYSKDFELAEIEVNHG

Nucleotide


Download         Length: 783 bp        

>NTDB_id=822645 R6U80_RS01965 WP_023188991.1 390963..391745(+) (yaaT) [Lactococcus lactis strain NCK401]
ATGATTTATGAAATAAAATTTGCACATGGCGAATCAAATGTATTTGCAATAAGTGATATAGAACTTGCTCCACAAACAGA
AGTTATCCTTCGTTCAGATAAGGGAAACTTTTACGGAAAAATTGTACGTGAAATTTCTGAAGAAGCTAATCTTGAAATTC
ACCACACGATTGTGCGTGAAGTAAATGAGGATGATCTCCAAGTTATTGCAAAACTTGAAGAACGTTCTAAACAAGCCAAA
GATAAAGTTCGCCAACTTATCATCGAACAAGGTTTGGAAATGAAAATTATTGATGTTGCTTATAATTTCGACCAAATGCA
ACTTTTTATTTCGTTTACAGCAGAGAATCGTGTTGATTTTCGATTGCTTTTGCGTGAGTTGGCAACAACTTTTAGAATTA
GGATTGAACTTCGCCAAATTGGGCCAAGAGATGCGGCTAAAATTCATGGTGGACTTGGACCTTGTGGACGTCCTTTGTGC
TGTTCTGAGTTTGTTTATGAATTTCCAAATGTTTCAATCAAAATGGCCAAAAATCAAAATCTATCTTTGAAACAAAATAA
ATTGAACGGTCTTTGCGGTCGTTTGATGTGCTGTTTAACTTATGAAGATAGTTTTTATAAAGAAGCCCAACAACTTTTCC
CAGATTTTGGTGAGTTTGTAACTACCTCAGAAGGAAAAGGAAAAGTTGTTGGCTTAAATGTTTTAAAAAATAGAGTAAAA
ATCCGCTTTGGAGAATATAGCAAGGATTTTGAACTTGCAGAAATTGAGGTGAATCATGGCTGA

Domains

Predicted by InterProScan.

PSP1 C-terminal conserved region (PSP1)

(56-140)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  yaaT Bacillus subtilis subsp. subtilis str. 168

45.662

84.231

0.385