Detailed information    

insolico Bioinformatically predicted

Overview

Name   vicX   Type   Regulator
Locus tag   R6U80_RS01940 Genome accession   NZ_CP137623
Coordinates   385989..386801 (-) Length   270 a.a.
NCBI ID   WP_003131583.1    Uniprot ID   Q9CIG7
Organism   Lactococcus lactis strain NCK401     
Function   require for competence development (predicted from homology)   
Competence regulation

Genomic Context

Location: 380989..391801
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  R6U80_RS01915 (R6U80_01915) ytpR 381216..381842 (+) 627 WP_003131594.1 YtpR family tRNA-binding protein -
  R6U80_RS01920 (R6U80_01920) nox 382005..383345 (+) 1341 WP_023188995.1 H2O-forming NADH oxidase -
  R6U80_RS01925 (R6U80_01925) - 383434..383823 (+) 390 WP_010905314.1 single-stranded DNA-binding protein -
  R6U80_RS01930 (R6U80_01930) groES 383943..384227 (+) 285 WP_003131589.1 co-chaperone GroES -
  R6U80_RS01935 (R6U80_01935) groL 384316..385944 (+) 1629 WP_003131585.1 chaperonin GroEL -
  R6U80_RS01940 (R6U80_01940) vicX 385989..386801 (-) 813 WP_003131583.1 MBL fold metallo-hydrolase Regulator
  R6U80_RS01945 (R6U80_01945) vicK 386970..388412 (-) 1443 WP_012897229.1 cell wall metabolism sensor histidine kinase WalK Regulator
  R6U80_RS01950 (R6U80_01950) yycF 388405..389106 (-) 702 WP_003131580.1 response regulator YycF -
  R6U80_RS01955 (R6U80_01955) tmk 389284..389919 (+) 636 WP_012897230.1 dTMP kinase -
  R6U80_RS01960 (R6U80_01960) - 390051..390911 (+) 861 WP_003131573.1 DNA polymerase III subunit delta' -
  R6U80_RS01965 (R6U80_01965) yaaT 390963..391745 (+) 783 WP_023188991.1 stage 0 sporulation family protein Regulator

Sequence

Protein


Download         Length: 270 a.a.        Molecular weight: 30522.37 Da        Isoelectric Point: 5.8494

>NTDB_id=822642 R6U80_RS01940 WP_003131583.1 385989..386801(-) (vicX) [Lactococcus lactis strain NCK401]
MTEQNGFKYSILASGSTGNSFYLETPKKKILVDAGLSGKKIESLLSEIDRDIHDIDALLITHEHSDHIKGIGVLARKYGI
DLYANEDTWSELDSKNALGKIPVEQKHLFEMGKTMTFGDIDIESFGVSHDAIAPQFYRFMKDNKSFVMLTDTGYVSDRMR
GTIENADAYLMESNHDIEILRMGAYPWRTKQRILSDQGHLSNEDGAEAAFSIHGNKTKRIFLGHLSLNNNIKELAHLTMD
GYLQQHDVDTKKDLKILDTSHEHASQLYDI

Nucleotide


Download         Length: 813 bp        

>NTDB_id=822642 R6U80_RS01940 WP_003131583.1 385989..386801(-) (vicX) [Lactococcus lactis strain NCK401]
ATGACTGAACAAAATGGCTTTAAATATTCCATTTTAGCCTCTGGTTCAACAGGAAATTCTTTTTACTTAGAAACTCCAAA
GAAAAAAATTCTTGTTGATGCCGGACTATCTGGAAAAAAAATAGAAAGTTTACTATCAGAAATTGACCGTGACATTCATG
ATATTGATGCTTTATTAATTACCCATGAACATAGTGACCATATCAAAGGGATTGGTGTTTTGGCAAGAAAATATGGTATT
GACCTTTACGCAAATGAAGATACTTGGTCTGAACTAGATAGTAAAAATGCTTTAGGAAAAATCCCTGTTGAACAAAAACA
TCTGTTTGAAATGGGAAAAACAATGACTTTTGGTGATATTGATATTGAATCTTTCGGCGTGAGTCACGATGCTATCGCAC
CACAGTTTTATCGTTTCATGAAAGATAACAAAAGTTTTGTTATGCTAACTGATACAGGTTATGTATCCGATAGAATGCGT
GGAACCATTGAAAATGCAGATGCTTATCTTATGGAATCAAACCATGACATTGAGATACTCCGCATGGGAGCCTATCCTTG
GCGGACAAAGCAACGTATCCTAAGTGACCAAGGCCACTTATCTAATGAGGACGGCGCTGAGGCTGCTTTTAGTATTCATG
GTAATAAGACAAAACGAATTTTTCTAGGGCACTTGAGTTTAAATAATAATATCAAAGAACTTGCTCATCTTACTATGGAT
GGTTACTTACAGCAACATGATGTCGATACCAAAAAGGACTTGAAGATCCTTGATACTAGTCACGAACATGCTAGTCAACT
TTACGATATTTAG

Domains

Predicted by InterProScan.

Beta-lactamase superfamily domain (Lactamase_B_2)

(29-222)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB Q9CIG7

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  vicX Streptococcus mutans UA159

68.519

100

0.685