Detailed information    

insolico Bioinformatically predicted

Overview

Name   comEA   Type   Machinery gene
Locus tag   QFB56_RS16095 Genome accession   NZ_CP123765
Coordinates   3282335..3282739 (-) Length   134 a.a.
NCBI ID   WP_032057521.1    Uniprot ID   -
Organism   Acinetobacter pittii strain AP8900     
Function   dsDNA binding (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3277335..3287739
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QFB56_RS16065 (QFB56_16065) - 3277419..3277688 (-) 270 WP_000567533.1 HPr family phosphocarrier protein -
  QFB56_RS16070 (QFB56_16070) rapZ 3277685..3278536 (-) 852 WP_002117179.1 RNase adapter RapZ -
  QFB56_RS16075 (QFB56_16075) panC 3278560..3279408 (-) 849 WP_032057513.1 pantoate--beta-alanine ligase -
  QFB56_RS16080 (QFB56_16080) panB 3279412..3280221 (-) 810 WP_032057515.1 3-methyl-2-oxobutanoate hydroxymethyltransferase -
  QFB56_RS16085 (QFB56_16085) folK 3280267..3280749 (-) 483 WP_032057517.1 2-amino-4-hydroxy-6- hydroxymethyldihydropteridine diphosphokinase -
  QFB56_RS16090 (QFB56_16090) pcnB 3280746..3282209 (-) 1464 WP_032057519.1 polynucleotide adenylyltransferase PcnB -
  QFB56_RS16095 (QFB56_16095) comEA 3282335..3282739 (-) 405 WP_032057521.1 ComEA family DNA-binding protein Machinery gene
  QFB56_RS16100 (QFB56_16100) mazG 3282708..3283514 (-) 807 WP_032057523.1 nucleoside triphosphate pyrophosphohydrolase -
  QFB56_RS16105 (QFB56_16105) - 3283627..3284400 (+) 774 WP_014208394.1 SDR family oxidoreductase -
  QFB56_RS16110 (QFB56_16110) relA 3284447..3286753 (-) 2307 WP_002117181.1 bifunctional (p)ppGpp synthetase/guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase -

Sequence

Protein


Download         Length: 134 a.a.        Molecular weight: 15518.74 Da        Isoelectric Point: 10.5869

>NTDB_id=822625 QFB56_RS16095 WP_032057521.1 3282335..3282739(-) (comEA) [Acinetobacter pittii strain AP8900]
MQLSMNLWKNKHNIFIVLFWSLISSTFIQAQSFDQNFKEWKTKQQRYDQKLSMQHSSHSNSPKSSVMTDSSGQIHLNQAN
IDELQKLKGIGEKKAQAIVEYRQKNGGFKNIDEFKNVKGIGPAIFEKNKTRLTL

Nucleotide


Download         Length: 405 bp        

>NTDB_id=822625 QFB56_RS16095 WP_032057521.1 3282335..3282739(-) (comEA) [Acinetobacter pittii strain AP8900]
ATGCAGCTCAGCATGAATCTTTGGAAGAATAAGCACAATATTTTCATTGTTTTATTTTGGAGCCTGATTTCTTCAACCTT
TATTCAGGCTCAATCTTTTGATCAAAATTTTAAGGAGTGGAAGACTAAACAGCAGAGGTATGATCAGAAGTTGAGCATGC
AGCATTCCTCTCATTCTAACAGTCCAAAAAGTTCAGTTATGACTGATTCGTCAGGGCAAATTCACTTGAATCAAGCCAAT
ATTGATGAGCTCCAAAAGCTAAAAGGTATTGGTGAGAAAAAGGCTCAGGCAATTGTGGAATACCGTCAAAAGAATGGTGG
CTTTAAAAATATTGATGAATTTAAAAACGTAAAGGGCATTGGTCCCGCCATTTTTGAAAAGAATAAAACGCGTTTGACTT
TATAA

Domains

Predicted by InterproScan.

Helix-hairpin-helix motif (HHH_3)

(71-133)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comEA Acinetobacter baumannii strain A118

68.613

100

0.701
  comEA Acinetobacter baumannii D1279779

68.613

100

0.701
  comEA Acinetobacter baylyi ADP1

42.742

92.537

0.396