Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilX   Type   Machinery gene
Locus tag   QFB56_RS01825 Genome accession   NZ_CP123765
Coordinates   378200..379009 (+) Length   269 a.a.
NCBI ID   WP_005067126.1    Uniprot ID   A0A009NM66
Organism   Acinetobacter pittii strain AP8900     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 373200..384009
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QFB56_RS01790 (QFB56_01790) - 373758..373913 (-) 156 Protein_343 hypothetical protein -
  QFB56_RS01795 (QFB56_01795) rpoZ 373952..374230 (-) 279 WP_002116990.1 DNA-directed RNA polymerase subunit omega -
  QFB56_RS01800 (QFB56_01800) gmk 374303..374932 (-) 630 WP_005804544.1 guanylate kinase -
  QFB56_RS01805 (QFB56_01805) ispH 375055..376005 (+) 951 WP_002116992.1 4-hydroxy-3-methylbut-2-enyl diphosphate reductase -
  QFB56_RS01810 (QFB56_01810) fimU 376175..376648 (+) 474 WP_032057265.1 GspH/FimT family pseudopilin Machinery gene
  QFB56_RS01815 (QFB56_01815) pilV 376642..377202 (+) 561 WP_080777128.1 type IV pilus modification protein PilV Machinery gene
  QFB56_RS01820 (QFB56_01820) pilW 377202..378203 (+) 1002 WP_032057268.1 PilW family protein Machinery gene
  QFB56_RS01825 (QFB56_01825) pilX 378200..379009 (+) 810 WP_005067126.1 PilX N-terminal domain-containing pilus assembly protein Machinery gene
  QFB56_RS01830 (QFB56_01830) pilY1 379021..382875 (+) 3855 WP_032057269.1 PilC/PilY family type IV pilus protein Machinery gene
  QFB56_RS01835 (QFB56_01835) pilY2 382886..383368 (+) 483 WP_002116770.1 type IV pilin protein Machinery gene
  QFB56_RS01840 (QFB56_01840) pilE 383365..383790 (+) 426 WP_002117055.1 type IV pilin protein Machinery gene

Sequence

Protein


Download         Length: 269 a.a.        Molecular weight: 28531.35 Da        Isoelectric Point: 7.7238

>NTDB_id=822604 QFB56_RS01825 WP_005067126.1 378200..379009(+) (pilX) [Acinetobacter pittii strain AP8900]
MTHLIHKSRSKEKGATLIVVLIILLIVISVGVLAIRVAIVSLKVATNSQVSQLNFQSSDTPLELIVQMNPTTLTNITNVI
GAALKEHESNPGAEYNFCYKPVSTATNFAQTRGASLLRAGSANNAVVEDGGVAGFCNLTTDYGSNRQAVVTQVAVSVPTD
AASDIPGSNLPRGTNTSEGTQLPKSMLSTQRIRVITTAFLPAYASTSIETLQRDCLSTSSAKISDNFDTALTAKQTLAEC
LANHNVPFSTQVQEFNYTNKLTQITAPGS

Nucleotide


Download         Length: 810 bp        

>NTDB_id=822604 QFB56_RS01825 WP_005067126.1 378200..379009(+) (pilX) [Acinetobacter pittii strain AP8900]
ATGACCCATTTAATTCATAAAAGTCGATCTAAAGAAAAAGGGGCAACCCTTATTGTTGTACTTATTATTTTATTAATTGT
TATTTCTGTAGGTGTTTTAGCAATAAGAGTGGCTATTGTTTCTTTAAAAGTTGCTACCAATAGCCAAGTGAGCCAATTAA
ATTTTCAGTCATCTGACACACCTTTAGAACTCATTGTGCAGATGAATCCTACCACCCTAACTAATATTACCAATGTGATT
GGCGCCGCGCTCAAAGAGCATGAAAGTAACCCAGGCGCAGAATACAACTTTTGTTATAAGCCTGTTTCTACAGCAACAAA
TTTTGCTCAAACCAGAGGTGCAAGTTTACTTCGAGCAGGAAGTGCCAATAATGCGGTTGTCGAAGATGGCGGAGTGGCGG
GTTTCTGCAATTTAACAACTGACTATGGAAGTAATCGTCAAGCAGTGGTTACCCAAGTTGCTGTAAGTGTTCCAACAGAT
GCTGCTAGCGATATCCCAGGTTCAAATTTACCACGAGGAACAAACACCTCGGAAGGTACGCAACTTCCTAAAAGCATGTT
GTCTACGCAACGTATTCGAGTGATCACAACTGCGTTTTTGCCAGCCTATGCTTCTACCTCTATTGAAACTTTACAAAGAG
ATTGCTTAAGCACGAGTTCGGCAAAAATTAGCGACAATTTTGATACCGCATTAACGGCTAAACAAACATTGGCGGAATGT
TTGGCAAATCATAACGTGCCTTTTAGTACTCAAGTTCAAGAATTTAACTATACCAATAAACTCACTCAAATTACGGCACC
AGGTTCATAA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A009NM66

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilX Acinetobacter baumannii D1279779

89.706

100

0.907