Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilY2   Type   Machinery gene
Locus tag   QFB56_RS01835 Genome accession   NZ_CP123765
Coordinates   382886..383368 (+) Length   160 a.a.
NCBI ID   WP_002116770.1    Uniprot ID   A0A009RUX0
Organism   Acinetobacter pittii strain AP8900     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 377886..388368
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QFB56_RS01825 (QFB56_01825) pilX 378200..379009 (+) 810 WP_005067126.1 PilX N-terminal domain-containing pilus assembly protein Machinery gene
  QFB56_RS01830 (QFB56_01830) pilY1 379021..382875 (+) 3855 WP_032057269.1 PilC/PilY family type IV pilus protein Machinery gene
  QFB56_RS01835 (QFB56_01835) pilY2 382886..383368 (+) 483 WP_002116770.1 type IV pilin protein Machinery gene
  QFB56_RS01840 (QFB56_01840) pilE 383365..383790 (+) 426 WP_002117055.1 type IV pilin protein Machinery gene
  QFB56_RS01845 (QFB56_01845) rpsP 383938..384189 (+) 252 WP_000260334.1 30S ribosomal protein S16 -
  QFB56_RS01850 (QFB56_01850) rimM 384209..384757 (+) 549 WP_002116736.1 ribosome maturation factor RimM -
  QFB56_RS01855 (QFB56_01855) trmD 384800..385555 (+) 756 WP_002116964.1 tRNA (guanosine(37)-N1)-methyltransferase TrmD -
  QFB56_RS01860 (QFB56_01860) rplS 385775..386143 (+) 369 WP_002116654.1 50S ribosomal protein L19 -
  QFB56_RS01865 (QFB56_01865) lip 386195..387136 (-) 942 WP_080777126.1 triacylglycerol lipase -
  QFB56_RS01870 (QFB56_01870) - 387252..388283 (-) 1032 WP_032057272.1 lipase secretion chaperone -

Sequence

Protein


Download         Length: 160 a.a.        Molecular weight: 17520.76 Da        Isoelectric Point: 8.4721

>NTDB_id=822606 QFB56_RS01835 WP_002116770.1 382886..383368(+) (pilY2) [Acinetobacter pittii strain AP8900]
MNKYYIQRFNQGVTLIELMVVIVIVAIFASIAIPSYQSYSRRATASAAKGEILKLAEQLERHKSKNFTYRGFTTTSVTLP
RGGYTIEISDDTTTGNLLTNAAANGQTWVIKATTTDSRNFNFIAKNSGLRCQSLTATAVDNDCGGAVTCNVCETNSENWQ

Nucleotide


Download         Length: 483 bp        

>NTDB_id=822606 QFB56_RS01835 WP_002116770.1 382886..383368(+) (pilY2) [Acinetobacter pittii strain AP8900]
ATGAATAAATACTATATCCAACGGTTTAATCAGGGTGTTACCTTGATTGAGCTCATGGTTGTCATCGTGATTGTCGCTAT
TTTTGCTTCGATTGCTATCCCTTCATATCAAAGTTATAGCCGCAGAGCGACTGCCTCTGCTGCTAAAGGTGAAATTCTAA
AATTGGCAGAACAGTTGGAACGGCATAAATCCAAGAACTTTACCTATAGAGGATTTACTACGACATCTGTAACTTTGCCA
CGGGGTGGTTATACGATTGAAATTAGTGATGATACGACGACAGGAAATTTATTGACGAATGCTGCTGCAAATGGGCAGAC
ATGGGTCATTAAAGCGACAACTACAGATTCAAGAAATTTTAATTTTATTGCTAAGAATTCAGGTTTGCGTTGCCAAAGTT
TAACAGCTACGGCTGTTGATAATGACTGTGGTGGAGCAGTCACTTGCAATGTATGTGAAACAAATAGTGAGAATTGGCAA
TGA

Domains

Predicted by InterproScan.

Type IV minor pilin ComP, DNA uptake sequence receptor (ComP_DUS)

(34-115)

Prokaryotic N-terminal methylation motif (N_methyl)

(10-32)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A009RUX0

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilY2 Acinetobacter baumannii D1279779

93.75

100

0.938
  comE Acinetobacter baylyi ADP1

40.678

100

0.45