Detailed information    

insolico Bioinformatically predicted

Overview

Name   fimU   Type   Machinery gene
Locus tag   QFB56_RS01810 Genome accession   NZ_CP123765
Coordinates   376175..376648 (+) Length   157 a.a.
NCBI ID   WP_032057265.1    Uniprot ID   A0AAE9M926
Organism   Acinetobacter pittii strain AP8900     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 371175..381648
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QFB56_RS01785 (QFB56_01785) spoT 371637..373742 (-) 2106 WP_032057263.1 HD domain-containing protein -
  QFB56_RS01790 (QFB56_01790) - 373758..373913 (-) 156 Protein_343 hypothetical protein -
  QFB56_RS01795 (QFB56_01795) rpoZ 373952..374230 (-) 279 WP_002116990.1 DNA-directed RNA polymerase subunit omega -
  QFB56_RS01800 (QFB56_01800) gmk 374303..374932 (-) 630 WP_005804544.1 guanylate kinase -
  QFB56_RS01805 (QFB56_01805) ispH 375055..376005 (+) 951 WP_002116992.1 4-hydroxy-3-methylbut-2-enyl diphosphate reductase -
  QFB56_RS01810 (QFB56_01810) fimU 376175..376648 (+) 474 WP_032057265.1 GspH/FimT family pseudopilin Machinery gene
  QFB56_RS01815 (QFB56_01815) pilV 376642..377202 (+) 561 WP_080777128.1 type IV pilus modification protein PilV Machinery gene
  QFB56_RS01820 (QFB56_01820) pilW 377202..378203 (+) 1002 WP_032057268.1 PilW family protein Machinery gene
  QFB56_RS01825 (QFB56_01825) pilX 378200..379009 (+) 810 WP_005067126.1 PilX N-terminal domain-containing pilus assembly protein Machinery gene

Sequence

Protein


Download         Length: 157 a.a.        Molecular weight: 16882.57 Da        Isoelectric Point: 7.7942

>NTDB_id=822601 QFB56_RS01810 WP_032057265.1 376175..376648(+) (fimU) [Acinetobacter pittii strain AP8900]
MRGIIPQDGFTLVELMVTIAVMAIIAMMAAPSMSNLLESKRLDGNQRDLINTLSEAKSQAILGRQDVSINLNSTALNTPT
SLNWKADSNNSLELKNIAADGTQSSLTATTLTFNANGVITNIAQDTLLSICNSKINKKKILILTKLGTLIFKAEETC

Nucleotide


Download         Length: 474 bp        

>NTDB_id=822601 QFB56_RS01810 WP_032057265.1 376175..376648(+) (fimU) [Acinetobacter pittii strain AP8900]
ATGAGGGGAATTATTCCACAAGACGGGTTCACCTTGGTTGAGCTTATGGTGACGATTGCGGTCATGGCTATTATCGCGAT
GATGGCCGCGCCATCTATGTCGAATTTATTAGAAAGCAAACGACTAGATGGAAACCAACGAGATCTAATCAATACTTTAT
CGGAAGCAAAGAGCCAAGCCATACTTGGTCGACAAGACGTTTCTATTAATCTGAATTCAACAGCTTTAAATACTCCCACT
TCCTTGAATTGGAAAGCTGATTCCAATAACAGTCTTGAGCTTAAAAATATCGCTGCTGATGGTACGCAGAGTTCGTTAAC
AGCGACGACTTTAACTTTTAATGCGAATGGGGTGATAACCAATATCGCCCAAGACACACTTTTATCTATCTGTAATTCAA
AAATAAATAAAAAGAAAATTCTTATTCTAACAAAGCTTGGCACATTAATTTTTAAAGCTGAGGAGACATGTTAA

Domains

Predicted by InterproScan.

Prokaryotic N-terminal methylation motif (N_methyl)

(7-29)

Type II transport protein GspH (GspH)

(47-135)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  fimU Acinetobacter baumannii D1279779

87.898

100

0.879