Detailed information    

insolico Bioinformatically predicted

Overview

Name   comL/pilP   Type   Machinery gene
Locus tag   R6U47_RS27285 Genome accession   NZ_CP137561
Coordinates   5805138..5805662 (+) Length   174 a.a.
NCBI ID   WP_003095836.1    Uniprot ID   G3XCX7
Organism   Pseudomonas aeruginosa strain CPA0053     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 5800138..5810662
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  R6U47_RS27265 (R6U47_27270) - 5800205..5802676 (-) 2472 WP_016562439.1 penicillin-binding protein 1A -
  R6U47_RS27270 (R6U47_27275) pilM 5802861..5803925 (+) 1065 WP_003110888.1 type IV pilus assembly protein PilM Machinery gene
  R6U47_RS27275 (R6U47_27280) pilN 5803925..5804521 (+) 597 WP_003095839.1 type 4a pilus biogenesis protein PilN Machinery gene
  R6U47_RS27280 (R6U47_27285) pilO 5804518..5805141 (+) 624 WP_003103268.1 type 4a pilus biogenesis protein PilO Machinery gene
  R6U47_RS27285 (R6U47_27290) comL/pilP 5805138..5805662 (+) 525 WP_003095836.1 type 4a pilus biogenesis lipoprotein PilP Machinery gene
  R6U47_RS27290 (R6U47_27295) pilQ 5805716..5807860 (+) 2145 WP_324001566.1 type 4a pilus secretin PilQ Machinery gene
  R6U47_RS27295 (R6U47_27300) aroK 5807872..5808390 (+) 519 WP_003095833.1 shikimate kinase AroK -
  R6U47_RS27300 (R6U47_27305) aroB 5808440..5809546 (+) 1107 WP_003107839.1 3-dehydroquinate synthase -

Sequence

Protein


Download         Length: 174 a.a.        Molecular weight: 19053.84 Da        Isoelectric Point: 9.4114

>NTDB_id=822502 R6U47_RS27285 WP_003095836.1 5805138..5805662(+) (comL/pilP) [Pseudomonas aeruginosa strain CPA0053]
MRARLILSSLLLASLAGCGGGSDFADLQSYMDEVRARPKGTIEPLPKFQPYEAFTYSAASLRSPFQPPVKIDLTVRQKGN
KVIKPDETRVKQFLEGFNIETFEMVGTLSNAQGTFALVKGAGGVHRVRVGDYLGRNDGKVVGISEGKIDVIEIVPDGEGN
WLERPRSLTLKERS

Nucleotide


Download         Length: 525 bp        

>NTDB_id=822502 R6U47_RS27285 WP_003095836.1 5805138..5805662(+) (comL/pilP) [Pseudomonas aeruginosa strain CPA0053]
ATGAGAGCCCGCCTGATTCTGAGCAGCCTGCTGCTCGCCAGCCTGGCCGGATGCGGCGGCGGTTCCGATTTCGCCGATCT
GCAGTCCTACATGGACGAGGTTCGCGCCCGACCCAAGGGCACCATCGAGCCGTTGCCGAAGTTCCAGCCGTACGAGGCCT
TCACCTATAGCGCCGCGTCGCTACGCAGCCCGTTCCAGCCGCCGGTGAAGATCGACCTGACCGTGCGGCAGAAGGGCAAC
AAGGTGATCAAGCCCGACGAGACGCGGGTCAAGCAGTTCCTGGAAGGCTTCAACATCGAGACCTTCGAGATGGTCGGCAC
CCTGTCCAACGCCCAGGGCACCTTCGCCCTGGTGAAGGGCGCGGGTGGCGTGCACCGGGTGAGGGTCGGGGACTACCTGG
GGCGCAACGACGGCAAGGTCGTCGGCATCAGCGAAGGAAAAATAGACGTGATCGAAATCGTTCCTGACGGAGAGGGGAAC
TGGCTGGAGCGTCCGCGCAGCCTGACTCTCAAGGAACGCTCCTGA

Domains

Predicted by InterProScan.

Pilus assembly protein, PilP (PilP)

(26-170)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  PDB 2Y4X
  PDB 2Y4Y

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comL/pilP Acinetobacter baylyi ADP1

36.416

99.425

0.362