Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilN   Type   Machinery gene
Locus tag   R6U47_RS27275 Genome accession   NZ_CP137561
Coordinates   5803925..5804521 (+) Length   198 a.a.
NCBI ID   WP_003095839.1    Uniprot ID   G3XD30
Organism   Pseudomonas aeruginosa strain CPA0053     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 5798925..5809521
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  R6U47_RS27265 (R6U47_27270) - 5800205..5802676 (-) 2472 WP_016562439.1 penicillin-binding protein 1A -
  R6U47_RS27270 (R6U47_27275) pilM 5802861..5803925 (+) 1065 WP_003110888.1 type IV pilus assembly protein PilM Machinery gene
  R6U47_RS27275 (R6U47_27280) pilN 5803925..5804521 (+) 597 WP_003095839.1 type 4a pilus biogenesis protein PilN Machinery gene
  R6U47_RS27280 (R6U47_27285) pilO 5804518..5805141 (+) 624 WP_003103268.1 type 4a pilus biogenesis protein PilO Machinery gene
  R6U47_RS27285 (R6U47_27290) comL/pilP 5805138..5805662 (+) 525 WP_003095836.1 type 4a pilus biogenesis lipoprotein PilP Machinery gene
  R6U47_RS27290 (R6U47_27295) pilQ 5805716..5807860 (+) 2145 WP_324001566.1 type 4a pilus secretin PilQ Machinery gene
  R6U47_RS27295 (R6U47_27300) aroK 5807872..5808390 (+) 519 WP_003095833.1 shikimate kinase AroK -

Sequence

Protein


Download         Length: 198 a.a.        Molecular weight: 22213.55 Da        Isoelectric Point: 10.0895

>NTDB_id=822500 R6U47_RS27275 WP_003095839.1 5803925..5804521(+) (pilN) [Pseudomonas aeruginosa strain CPA0053]
MARINLLPWREELREQRKQQFLVILGGVLVASAALVFLGDQYFTAAIENQNARNDFLRKEIVVLDARIKEISELKSRRQQ
LLERMKIIQDLQGNRPIIGRVFDQLVRTLPDGVYFTDLKMTGKNIAIAGAAESNNRVSNLMRNMDASEWLTAPTLNEVKA
VTQGAVDQANVFQLTVQQTQPGEEDAKAKHGVAQGAKK

Nucleotide


Download         Length: 597 bp        

>NTDB_id=822500 R6U47_RS27275 WP_003095839.1 5803925..5804521(+) (pilN) [Pseudomonas aeruginosa strain CPA0053]
ATGGCACGGATCAACCTTCTACCCTGGCGCGAAGAGCTGCGCGAGCAGCGCAAGCAGCAGTTCCTGGTGATTCTTGGCGG
CGTCCTGGTGGCATCGGCTGCGCTGGTATTCCTTGGCGACCAGTACTTCACCGCGGCCATCGAGAACCAGAACGCCCGCA
ACGACTTCCTGCGCAAGGAAATCGTCGTACTCGACGCCCGGATCAAGGAAATCAGCGAACTGAAGTCGCGGCGCCAGCAA
TTGCTCGAGCGGATGAAGATCATCCAGGACCTGCAGGGCAACCGTCCCATCATCGGACGGGTGTTCGACCAGCTCGTGCG
GACCTTGCCCGACGGCGTGTATTTCACCGACCTGAAGATGACCGGCAAGAACATCGCCATCGCCGGCGCGGCCGAGTCCA
ACAACCGCGTTTCCAATCTCATGCGCAACATGGACGCGTCCGAGTGGTTGACCGCCCCGACCCTGAACGAGGTCAAGGCG
GTGACCCAGGGCGCGGTGGACCAGGCCAACGTGTTCCAACTGACCGTGCAGCAGACGCAGCCCGGCGAGGAAGACGCCAA
GGCGAAGCATGGGGTTGCGCAAGGAGCCAAGAAATGA

Domains

Predicted by InterProScan.

Fimbrial assembly protein (PilN) (PilN)

(100-177)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  PDB 5EOU

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilN Legionella pneumophila strain ERS1305867

41.714

88.384

0.369