Detailed information    

insolico Bioinformatically predicted

Overview

Name   recG   Type   Machinery gene
Locus tag   R6U47_RS25630 Genome accession   NZ_CP137561
Coordinates   5445452..5447527 (-) Length   691 a.a.
NCBI ID   WP_023087918.1    Uniprot ID   -
Organism   Pseudomonas aeruginosa strain CPA0053     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 5440452..5452527
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  R6U47_RS25595 (R6U47_25600) - 5440620..5441021 (+) 402 WP_003098332.1 heme-binding protein -
  R6U47_RS25600 (R6U47_25605) - 5441155..5441322 (+) 168 WP_003098330.1 rubredoxin -
  R6U47_RS25605 (R6U47_25610) - 5441506..5441673 (+) 168 WP_003098329.1 rubredoxin -
  R6U47_RS25610 (R6U47_25615) alkT 5441725..5442879 (+) 1155 WP_324001435.1 rubredoxin-NAD(+) reductase AlkT -
  R6U47_RS25615 (R6U47_25620) - 5443021..5443353 (+) 333 WP_167755396.1 HU family DNA-binding protein -
  R6U47_RS25620 (R6U47_25625) - 5443489..5443881 (+) 393 WP_023087920.1 hypothetical protein -
  R6U47_RS25625 (R6U47_25630) - 5443953..5445362 (-) 1410 WP_023087919.1 HDOD domain-containing protein -
  R6U47_RS25630 (R6U47_25635) recG 5445452..5447527 (-) 2076 WP_023087918.1 ATP-dependent DNA helicase RecG Machinery gene
  R6U47_RS25635 (R6U47_25640) oxyR 5447524..5448456 (-) 933 WP_003096622.1 oxidative stress transcriptional regulator OxyR -
  R6U47_RS25640 (R6U47_25645) - 5448594..5449445 (+) 852 WP_003121310.1 SDR family oxidoreductase -
  R6U47_RS25645 (R6U47_25650) - 5449445..5450245 (+) 801 WP_003096615.1 AraC family transcriptional regulator -
  R6U47_RS25650 (R6U47_25655) - 5450312..5450932 (+) 621 WP_023087915.1 LysE family translocator -
  R6U47_RS25655 (R6U47_25660) - 5450939..5451670 (-) 732 WP_003096611.1 hypothetical protein -
  R6U47_RS25660 (R6U47_25665) - 5451725..5452105 (-) 381 WP_003096609.1 RidA family protein -

Sequence

Protein


Download         Length: 691 a.a.        Molecular weight: 76120.84 Da        Isoelectric Point: 7.4218

>NTDB_id=822489 R6U47_RS25630 WP_023087918.1 5445452..5447527(-) (recG) [Pseudomonas aeruginosa strain CPA0053]
MTELSRVPVTALKGVGAALAEKLARVGLETLQDILFHLPLRYQDRTRVTAIGALRPGADAVVEGVVAGADVVMGRRRSLL
VRLQDGSGTLSLRFYHFSQAQKDGLKRGTHLRCYGEVRPGASGLEIYHPEYRALNGDEPIPVEQTLTPIYPTTEGLTQQR
LRQLSQQALAMLGPSSLPDWLPAELARDYQLGPLDQAIRYLHRPPPDADIEELAEGRHWAQLRLAFEELLTHQLSLQRLR
EAVRSQAAPRLPAASRLPKRFLANLGFQPTGAQRRVGAEIAYDLAQDEPMLRLVQGDVGAGKTVVAALAALQAIEAGYQV
ALMAPTEILAEQHFLNFSKWLQPLDIEVAWLAGKLKGKARAAALERIGDGAPMVVGTHALFQDEVKFKRLALAIIDEQHR
FGVQQRLALRQKGVDGRLCPHQLIMTATPIPRTLAMSAYADLDTSILDELPPGRTPVNTVLVADSRRIEVIERVRAACRE
GRQAYWVCTLIEESEELTCQAAETTYEELSSALGELRVGLIHGRMKPADKAVVMEAFKEGMLQLLVATTVIEVGVDVPNA
SLMIIENPERLGLAQLHQLRGRVGRGSAASHCVLLYHPPLSQIGRERLGIMRETSDGFVIAEKDLELRGPGEMLGTRQTG
LLQFKVADLMRDADLLPAVRGAAQSLLAHWPQHVSPLLERWLRHGQQYGQV

Nucleotide


Download         Length: 2076 bp        

>NTDB_id=822489 R6U47_RS25630 WP_023087918.1 5445452..5447527(-) (recG) [Pseudomonas aeruginosa strain CPA0053]
ATGACCGAGCTGTCCAGGGTCCCGGTCACCGCGCTAAAGGGCGTAGGCGCCGCGCTGGCGGAGAAGCTCGCTCGGGTAGG
CCTGGAAACCCTGCAGGACATCCTGTTCCACCTGCCCCTGCGCTACCAGGACCGTACCCGCGTCACCGCCATCGGCGCCC
TGCGGCCAGGGGCCGACGCGGTGGTCGAGGGCGTGGTGGCCGGCGCCGACGTGGTGATGGGGCGCCGCCGCAGCCTGCTG
GTGCGCCTGCAGGACGGCAGCGGCACCCTGAGCCTGCGCTTCTACCATTTCAGCCAGGCGCAGAAGGACGGTCTCAAGCG
CGGCACCCACCTGCGCTGCTACGGCGAAGTCCGGCCGGGTGCCTCGGGCCTGGAGATCTACCATCCGGAATACCGCGCGC
TGAACGGCGACGAGCCGATTCCGGTGGAGCAGACCCTGACGCCGATCTACCCGACTACCGAGGGCCTCACCCAGCAGCGC
CTGCGCCAGTTGAGCCAACAGGCCCTGGCCATGCTCGGCCCCAGCAGCCTGCCCGACTGGCTGCCGGCGGAACTGGCCCG
CGATTACCAACTTGGCCCGCTCGACCAGGCGATCCGCTACCTGCACCGGCCGCCGCCGGATGCCGACATCGAGGAACTGG
CCGAAGGCCGGCACTGGGCGCAGTTGCGCCTGGCCTTCGAAGAACTGCTGACCCACCAGTTATCCCTGCAGCGCCTGCGC
GAAGCCGTGCGTTCGCAGGCAGCGCCGCGCTTGCCGGCGGCCAGCCGCTTGCCGAAACGCTTCCTTGCCAACCTCGGCTT
CCAGCCGACCGGCGCGCAACGCCGGGTCGGCGCGGAGATCGCCTACGACCTGGCCCAGGACGAACCGATGCTGCGCCTGG
TGCAAGGCGACGTCGGCGCCGGCAAGACCGTGGTCGCCGCCCTCGCCGCCCTGCAAGCCATAGAGGCCGGTTACCAGGTG
GCGCTGATGGCGCCGACCGAGATCCTCGCCGAGCAGCATTTCCTCAACTTCAGCAAGTGGCTCCAGCCGCTGGACATCGA
AGTCGCCTGGCTGGCCGGCAAGCTCAAGGGCAAGGCCCGCGCGGCGGCACTGGAACGCATCGGCGACGGCGCGCCGATGG
TGGTCGGCACCCACGCGCTGTTCCAGGATGAAGTGAAATTCAAGCGCCTTGCACTGGCGATCATCGACGAACAGCACCGC
TTCGGCGTGCAGCAGCGCCTGGCCCTGCGCCAGAAGGGCGTGGACGGCAGGCTCTGCCCACACCAGTTGATCATGACCGC
CACGCCGATCCCGCGGACCCTGGCGATGAGCGCCTATGCCGACCTCGACACCTCGATCCTCGACGAGCTGCCGCCCGGGC
GTACCCCGGTGAATACCGTGCTGGTGGCCGACAGCCGCCGTATCGAGGTGATCGAGCGAGTCCGCGCGGCTTGCCGCGAA
GGGCGCCAGGCCTACTGGGTGTGTACCCTGATCGAAGAGTCCGAGGAGCTTACCTGCCAGGCCGCCGAGACCACCTACGA
AGAGCTTTCCTCGGCGCTGGGCGAACTGCGTGTCGGCCTGATCCACGGGCGCATGAAGCCGGCGGACAAGGCCGTGGTGA
TGGAGGCCTTCAAGGAAGGCATGTTGCAACTGCTGGTGGCGACCACGGTGATCGAGGTCGGCGTCGACGTGCCCAACGCC
AGCCTGATGATCATCGAGAACCCCGAGCGCCTTGGCCTGGCCCAACTGCACCAGCTACGCGGCCGGGTTGGCCGGGGCAG
CGCCGCCAGCCACTGCGTGCTGCTCTACCACCCACCGCTGTCGCAGATCGGCCGCGAGCGGCTGGGCATCATGCGCGAAA
CCAGCGACGGCTTCGTCATCGCCGAGAAGGACCTGGAATTGCGCGGCCCCGGCGAAATGCTCGGCACCCGCCAGACCGGC
CTGCTGCAATTCAAGGTCGCCGACCTGATGCGCGACGCAGACCTGCTGCCGGCGGTCCGCGGTGCCGCCCAATCCCTCCT
GGCGCACTGGCCGCAGCATGTCAGCCCGCTGCTCGAACGGTGGTTGCGCCACGGCCAGCAATACGGTCAAGTGTGA

Domains

Predicted by InterProScan.

DEAD/DEAH box helicase (DEAD)

(293-430)

Helicase conserved C-terminal domain (Helicase_C)

(479-586)

RecG wedge domain (RecG_wedge)

(12-170)

ATP-dependent DNA helicase RecG, domain 3, C-terminal (RecG_dom3_C)

(614-675)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recG Neisseria meningitidis strain C311

50.373

97.106

0.489
  recG/mmsA Streptococcus pneumoniae R6

40.868

96.671

0.395
  recG/mmsA Streptococcus pneumoniae R36A

40.868

96.671

0.395
  recG Bacillus subtilis subsp. subtilis str. 168

40.356

97.54

0.394