Detailed information    

insolico Bioinformatically predicted

Overview

Name   comEA   Type   Machinery gene
Locus tag   QFX44_RS07880 Genome accession   NZ_CP123742
Coordinates   1624588..1625274 (-) Length   228 a.a.
NCBI ID   WP_001792568.1    Uniprot ID   A0A133PXY3
Organism   Staphylococcus aureus strain 1.10     
Function   dsDNA binding to the cell surface (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1619588..1630274
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QFX44_RS07860 rpsT 1620502..1620753 (+) 252 WP_001274017.1 30S ribosomal protein S20 -
  QFX44_RS07865 holA 1620798..1621772 (-) 975 WP_304984666.1 DNA polymerase III subunit delta -
  QFX44_RS07870 comEC 1621829..1624030 (-) 2202 WP_001566051.1 DNA internalization-related competence protein ComEC/Rec2 Machinery gene
  QFX44_RS07875 - 1624035..1624496 (-) 462 WP_000439693.1 ComE operon protein 2 -
  QFX44_RS07880 comEA 1624588..1625274 (-) 687 WP_001792568.1 ComEA family DNA-binding protein Machinery gene
  QFX44_RS07885 - 1625314..1626030 (-) 717 WP_000084829.1 class I SAM-dependent methyltransferase -
  QFX44_RS07890 rsfS 1626033..1626386 (-) 354 WP_001088022.1 ribosome silencing factor -
  QFX44_RS07895 yqeK 1626387..1626971 (-) 585 WP_001019324.1 bis(5'-nucleosyl)-tetraphosphatase (symmetrical) YqeK -
  QFX44_RS07900 nadD 1626961..1627530 (-) 570 WP_000725162.1 nicotinate (nicotinamide) nucleotide adenylyltransferase -
  QFX44_RS07905 yhbY 1627533..1627823 (-) 291 WP_000955231.1 ribosome assembly RNA-binding protein YhbY -
  QFX44_RS07910 aroE 1627827..1628633 (-) 807 WP_000666761.1 shikimate dehydrogenase -
  QFX44_RS07915 yqeH 1628647..1629747 (-) 1101 WP_001280141.1 ribosome biogenesis GTPase YqeH -

Sequence

Protein


Download         Length: 228 a.a.        Molecular weight: 25863.49 Da        Isoelectric Point: 9.3305

>NTDB_id=822144 QFX44_RS07880 WP_001792568.1 1624588..1625274(-) (comEA) [Staphylococcus aureus strain 1.10]
MVLLYQFLLRYKDFLTQWKLYILSAVVLIMVLIGFIFWRQDDYTSRNFENKDTALKQSTSENSSLSKVEDVQVKDGDNSK
NKGPVYVDVKGAVKHPNVYKMTSKDRVVDLLDKAQLLEDADVSQINLSEKLTDQKMIFIPHKGQKNVEPQIEVNSVHEKN
GNTNNTKVNLNTASVSELMSVPGVGQAKANAIVEYRNQQGAFQEIDDLKKVKGFGSKTFDKLKSYFTT

Nucleotide


Download         Length: 687 bp        

>NTDB_id=822144 QFX44_RS07880 WP_001792568.1 1624588..1625274(-) (comEA) [Staphylococcus aureus strain 1.10]
GTGGTTTTATTGTATCAATTTTTATTACGCTATAAAGATTTTTTAACTCAATGGAAGTTATATATTCTAAGTGCTGTTGT
TTTAATTATGGTATTAATTGGTTTTATATTCTGGAGACAAGATGATTATACTTCAAGAAATTTTGAAAATAAAGATACTG
CTCTGAAACAAAGCACTAGTGAAAATAGTAGTTTGTCCAAAGTAGAAGATGTCCAGGTCAAAGATGGAGATAATTCCAAA
AATAAGGGTCCTGTATATGTCGATGTAAAAGGTGCTGTTAAACATCCTAATGTTTATAAAATGACATCTAAGGATAGAGT
AGTTGATTTACTTGATAAAGCACAATTATTGGAGGATGCAGATGTAAGTCAAATTAATTTGTCTGAAAAATTAACAGATC
AAAAAATGATTTTCATACCTCATAAAGGACAAAAGAATGTTGAACCACAAATTGAAGTAAACAGTGTGCACGAAAAAAAT
GGGAACACAAATAATACTAAAGTAAATTTAAATACGGCATCTGTATCAGAATTGATGTCTGTTCCTGGAGTTGGGCAAGC
TAAAGCTAATGCAATTGTTGAATATCGCAACCAACAAGGTGCATTTCAAGAAATTGACGATTTGAAAAAAGTAAAAGGTT
TTGGAAGTAAAACTTTTGATAAACTGAAATCTTATTTCACGACATAA

Domains

Predicted by InterproScan.

Helix-hairpin-helix motif (HHH_3)

(164-227)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A133PXY3

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comEA Staphylococcus aureus MW2

98.238

99.561

0.978
  comEA Staphylococcus aureus N315

97.357

99.561

0.969