Detailed information    

insolico Bioinformatically predicted

Overview

Name   comE   Type   Machinery gene
Locus tag   R5Y34_RS09630 Genome accession   NZ_CP137530
Coordinates   1937132..1937596 (-) Length   154 a.a.
NCBI ID   WP_194732767.1    Uniprot ID   -
Organism   Neisseria meningitidis strain EXNM678     
Function   DNA binding (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1932132..1942596
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  R5Y34_RS09600 - 1932881..1933936 (-) 1056 WP_002221681.1 DNA cytosine methyltransferase -
  R5Y34_RS09605 - 1934342..1934467 (-) 126 Protein_1862 IS5/IS1182 family transposase -
  R5Y34_RS09610 - 1934557..1935522 (+) 966 WP_002216744.1 IS30-like element IS1655 family transposase -
  R5Y34_RS09615 - 1935548..1935898 (-) 351 Protein_1864 IS5/IS1182 family transposase -
  R5Y34_RS09620 - 1936111..1936434 (+) 324 WP_202052896.1 5'-nucleotidase -
  R5Y34_RS09625 comP 1936595..1937044 (-) 450 WP_002221685.1 type IV pilin protein Machinery gene
  R5Y34_RS09630 comE 1937132..1937596 (-) 465 WP_194732767.1 ComEA family DNA-binding protein Machinery gene

Sequence

Protein


Download         Length: 154 a.a.        Molecular weight: 16533.78 Da        Isoelectric Point: 10.9695

>NTDB_id=822142 R5Y34_RS09630 WP_194732767.1 1937132..1937596(-) (comE) [Neisseria meningitidis strain EXNM678]
MLYPEKMSGMAGRHPYGVRSGLRRNGLKLWDIHFRMTRFIVARCGLLFATLKGKTMKKMFVLFCMLFSCAFSLAAVNINA
ASQQELEALPGIGPAKAKAIAEYRAQNGAFKSVDDLTKVKGIGPAVLAKLKDQASVGAPAPKAPAKPAIPAAKK

Nucleotide


Download         Length: 465 bp        

>NTDB_id=822142 R5Y34_RS09630 WP_194732767.1 1937132..1937596(-) (comE) [Neisseria meningitidis strain EXNM678]
TTGCTTTACCCGGAAAAAATGTCGGGGATGGCGGGACGGCATCCGTACGGCGTCCGGTCGGGTTTGCGGAGGAACGGCTT
GAAACTTTGGGATATTCATTTTAGAATGACCCGTTTTATCGTCGCAAGATGCGGTTTATTGTTTGCAACCCTTAAAGGAA
AAACCATGAAGAAAATGTTCGTGCTGTTCTGTATGCTGTTCTCCTGCGCCTTCTCCCTTGCGGCGGTAAACATCAATGCG
GCTTCGCAGCAGGAGTTGGAGGCGCTGCCGGGCATAGGCCCTGCGAAGGCGAAGGCCATTGCGGAATACCGTGCGCAAAA
CGGTGCGTTCAAGTCTGTGGACGATTTGACCAAGGTAAAGGGCATCGGCCCTGCGGTGCTGGCGAAGCTGAAGGATCAGG
CTTCTGTCGGCGCGCCCGCACCAAAAGCCCCAGCCAAACCGGCTATACCGGCCGCTAAAAAATAG

Domains

Predicted by InterProScan.

Helix-hairpin-helix motif (HHH_3)

(75-133)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comE Neisseria gonorrhoeae MS11

91.803

79.221

0.727
  comE Neisseria gonorrhoeae MS11

91.803

79.221

0.727
  comE Neisseria gonorrhoeae MS11

91.803

79.221

0.727
  comE Neisseria gonorrhoeae MS11

91.803

79.221

0.727