Detailed information    

insolico Bioinformatically predicted

Overview

Name   ruvA   Type   Machinery gene
Locus tag   R5Y32_RS04575 Genome accession   NZ_CP137529
Coordinates   914600..915184 (-) Length   194 a.a.
NCBI ID   WP_002234505.1    Uniprot ID   A1KRU4
Organism   Neisseria meningitidis strain EXNM666     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 909600..920184
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  R5Y32_RS04545 - 910030..910329 (+) 300 WP_002215645.1 DUF2818 family protein -
  R5Y32_RS04550 - 910438..911334 (-) 897 WP_002226001.1 polyprenyl synthetase family protein -
  R5Y32_RS04555 - 911318..911626 (-) 309 WP_002221599.1 exodeoxyribonuclease VII small subunit -
  R5Y32_RS04560 rsgA 911653..912576 (-) 924 WP_002247948.1 ribosome small subunit-dependent GTPase A -
  R5Y32_RS04565 - 912581..914437 (-) 1857 WP_002247949.1 ABC transporter ATP-binding protein -
  R5Y32_RS04570 - 914463..914600 (-) 138 WP_002247950.1 hypothetical protein -
  R5Y32_RS04575 ruvA 914600..915184 (-) 585 WP_002234505.1 Holliday junction branch migration protein RuvA Machinery gene
  R5Y32_RS04580 - 915266..915592 (-) 327 WP_002218661.1 PepSY domain-containing protein -
  R5Y32_RS04585 - 915646..916365 (-) 720 WP_002221595.1 septal ring lytic transglycosylase RlpA family protein -
  R5Y32_RS04590 - 916362..916484 (-) 123 WP_009346050.1 hypothetical protein -
  R5Y32_RS04595 trmL 916495..916959 (-) 465 WP_002215661.1 tRNA (uridine(34)/cytosine(34)/5- carboxymethylaminomethyluridine(34)-2'-O)- methyltransferase TrmL -
  R5Y32_RS04600 - 917024..917749 (-) 726 WP_002221594.1 ComF family protein -
  R5Y32_RS04605 bioH 917748..918491 (+) 744 WP_002221593.1 pimeloyl-ACP methyl ester esterase BioH -
  R5Y32_RS04610 - 918493..919281 (+) 789 WP_002221592.1 hypothetical protein -

Sequence

Protein


Download         Length: 194 a.a.        Molecular weight: 20628.88 Da        Isoelectric Point: 5.8480

>NTDB_id=822040 R5Y32_RS04575 WP_002234505.1 914600..915184(-) (ruvA) [Neisseria meningitidis strain EXNM666]
MISRLTGKLVEKNPPQIVIDVNGVGYEADVSMQTFYNLPPVGESVQLFTQLIIREDAHLLFGFATAEERKTFRQLIKVSG
IGAKTALGILSAMTADELAQAVAEEDVKRLSSAPGIGKKTAERMVLELRGKLVAHAVTDGLFAAAPAADETEDIVGTLLA
LGYSEREAKAAVKGVPKGTDVGEGVRLALKNLLK

Nucleotide


Download         Length: 585 bp        

>NTDB_id=822040 R5Y32_RS04575 WP_002234505.1 914600..915184(-) (ruvA) [Neisseria meningitidis strain EXNM666]
ATGATCAGCAGACTGACCGGCAAACTGGTTGAAAAAAACCCTCCGCAAATCGTCATCGATGTCAACGGTGTCGGCTATGA
GGCCGACGTATCGATGCAGACCTTCTACAACCTGCCGCCCGTGGGTGAAAGCGTACAACTGTTTACCCAGCTTATCATTC
GGGAAGACGCACATCTTTTATTTGGTTTTGCCACTGCGGAAGAACGCAAAACATTCCGCCAACTGATTAAGGTCAGCGGC
ATCGGCGCGAAAACGGCTTTGGGCATTTTGTCGGCGATGACGGCAGACGAGCTGGCGCAGGCGGTTGCAGAAGAAGATGT
CAAACGCCTCTCCTCCGCCCCGGGAATCGGCAAAAAAACCGCCGAACGCATGGTTTTGGAACTGCGCGGCAAGCTGGTCG
CGCATGCGGTAACGGACGGGCTGTTTGCCGCCGCACCCGCCGCCGACGAAACGGAAGACATCGTCGGCACGCTCCTCGCC
CTCGGTTACAGCGAACGCGAGGCAAAAGCGGCGGTCAAAGGCGTTCCGAAAGGGACGGACGTGGGCGAAGGCGTGCGCCT
TGCTTTGAAAAACCTGCTGAAATAA

Domains

Predicted by InterProScan.

RuvA, C-terminal domain (RuvA_C)

(150-192)

RuvA N terminal domain (RuvA_N)

(1-62)

Helix-hairpin-helix domain (HHH_5)

(72-129)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A1KRU4

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ruvA Streptococcus pneumoniae R6

38.5

100

0.397
  ruvA Streptococcus pneumoniae D39

38.5

100

0.397
  ruvA Streptococcus pneumoniae TIGR4

38

100

0.392
  ruvA Bacillus subtilis subsp. subtilis str. 168

35.437

100

0.376