Detailed information
Bioinformatically predicted
Overview
| Name | pilD | Type | Machinery gene |
| Locus tag | R5022_RS28665 | Genome accession | NZ_CP137514 |
| Coordinates | 6107309..6108181 (-) | Length | 290 a.a. |
| NCBI ID | WP_003116251.1 | Uniprot ID | - |
| Organism | Pseudomonas aeruginosa strain HPA0170 | ||
| Function | assembly of type IV pilus (predicted from homology) DNA binding and uptake |
||
Genomic Context
Location: 6102309..6113181
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| R5022_RS28620 (R5022_28620) | - | 6103170..6103340 (-) | 171 | WP_003094672.1 | DUF3094 family protein | - |
| R5022_RS28625 (R5022_28625) | - | 6103366..6103815 (-) | 450 | WP_023100233.1 | MOSC domain-containing protein | - |
| R5022_RS28630 (R5022_28630) | - | 6103812..6104441 (-) | 630 | WP_003094668.1 | DUF1780 domain-containing protein | - |
| R5022_RS28635 (R5022_28635) | - | 6104574..6104999 (+) | 426 | WP_003103865.1 | GNAT family N-acetyltransferase | - |
| R5022_RS28640 (R5022_28640) | - | 6104996..6105466 (+) | 471 | WP_003094664.1 | hypothetical protein | - |
| R5022_RS28645 (R5022_28645) | - | 6105463..6106152 (+) | 690 | WP_003094662.1 | energy-coupling factor ABC transporter permease | - |
| R5022_RS28650 (R5022_28650) | - | 6106258..6106467 (+) | 210 | WP_003094660.1 | hypothetical protein | - |
| R5022_RS28655 (R5022_28655) | yacG | 6106504..6106704 (-) | 201 | WP_003094656.1 | DNA gyrase inhibitor YacG | - |
| R5022_RS28660 (R5022_28660) | coaE | 6106701..6107312 (-) | 612 | WP_003094654.1 | dephospho-CoA kinase | - |
| R5022_RS28665 (R5022_28665) | pilD | 6107309..6108181 (-) | 873 | WP_003116251.1 | type IV prepilin peptidase/methyltransferase PilD | Machinery gene |
| R5022_RS28670 (R5022_28670) | pilC | 6108184..6109401 (-) | 1218 | WP_003116250.1 | type II secretion system F family protein | Machinery gene |
| R5022_RS28675 (R5022_28675) | pilB | 6109405..6111108 (-) | 1704 | WP_003116249.1 | type IV-A pilus assembly ATPase PilB | Machinery gene |
| R5022_RS28680 (R5022_28680) | pilE | 6111337..6111876 (+) | 540 | WP_278025408.1 | pilin | Machinery gene |
| R5022_RS28685 (R5022_28685) | - | 6112081..6112638 (+) | 558 | WP_224754157.1 | hypothetical protein | - |
Sequence
Protein
Download Length: 290 a.a. Molecular weight: 31871.89 Da Isoelectric Point: 7.3454
>NTDB_id=821905 R5022_RS28665 WP_003116251.1 6107309..6108181(-) (pilD) [Pseudomonas aeruginosa strain HPA0170]
MELLDYLASHPLAFVLCAILLGLLVGSFLNVVVHRLPKMMERNWKAEAREALGLEPEPKQATYNLVLPNSACPRCGHEIR
PWENIPLVSYLALGGKCSSCKAAIGKRYPLVELATALLSGYVAWHFGFTWQAGAMLLLTWGLLAMSLIDADHQLLPDVLV
LPLLWLGLIANHFGLFASLDDALFGAVFGYLSLWSVFWLFKLVTGKEGMGYGDFKLLAMLGAWGGWQILPLTILLSSLVG
AILGVIMLRLRNAESGTPIPFGPYLAIAGWIALLWGDQITRTYLQFAGFK
MELLDYLASHPLAFVLCAILLGLLVGSFLNVVVHRLPKMMERNWKAEAREALGLEPEPKQATYNLVLPNSACPRCGHEIR
PWENIPLVSYLALGGKCSSCKAAIGKRYPLVELATALLSGYVAWHFGFTWQAGAMLLLTWGLLAMSLIDADHQLLPDVLV
LPLLWLGLIANHFGLFASLDDALFGAVFGYLSLWSVFWLFKLVTGKEGMGYGDFKLLAMLGAWGGWQILPLTILLSSLVG
AILGVIMLRLRNAESGTPIPFGPYLAIAGWIALLWGDQITRTYLQFAGFK
Nucleotide
Download Length: 873 bp
>NTDB_id=821905 R5022_RS28665 WP_003116251.1 6107309..6108181(-) (pilD) [Pseudomonas aeruginosa strain HPA0170]
ATGGAACTCCTCGACTACCTGGCCAGCCATCCGCTGGCCTTTGTCTTGTGCGCCATCCTCCTTGGCCTGCTGGTCGGCAG
CTTCCTCAACGTCGTCGTGCATCGCCTGCCGAAGATGATGGAGCGCAACTGGAAGGCCGAAGCCCGCGAAGCGCTCGGGC
TGGAGCCGGAACCCAAGCAGGCGACCTACAACCTGGTGCTGCCGAATTCGGCGTGCCCGCGCTGCGGCCACGAGATCCGC
CCCTGGGAAAACATCCCGCTGGTCAGCTACCTGGCGCTGGGCGGCAAGTGCTCGTCCTGCAAGGCCGCCATCGGCAAACG
CTACCCCCTGGTGGAACTGGCCACCGCGCTGCTTTCCGGCTACGTCGCCTGGCATTTCGGCTTCACCTGGCAGGCGGGCG
CGATGCTCCTGCTGACCTGGGGTCTGCTGGCGATGAGCCTGATCGATGCCGATCACCAACTGCTGCCGGACGTGCTGGTG
CTGCCGTTGCTCTGGCTGGGCCTGATCGCCAACCATTTCGGCCTCTTCGCCAGCCTCGACGATGCGCTGTTCGGCGCGGT
GTTCGGCTACCTGAGCCTGTGGTCGGTGTTCTGGCTGTTCAAGCTGGTGACCGGCAAGGAGGGCATGGGCTACGGCGACT
TCAAGCTGCTGGCCATGCTCGGTGCCTGGGGCGGCTGGCAGATCCTGCCGCTGACCATCCTGCTGTCGTCGCTGGTCGGG
GCGATCCTCGGGGTGATCATGCTGCGCCTGCGCAACGCCGAAAGCGGCACGCCGATCCCCTTCGGTCCCTATCTGGCGAT
TGCCGGGTGGATTGCTTTGCTCTGGGGTGATCAAATAACCCGGACCTATCTGCAATTCGCCGGATTCAAATGA
ATGGAACTCCTCGACTACCTGGCCAGCCATCCGCTGGCCTTTGTCTTGTGCGCCATCCTCCTTGGCCTGCTGGTCGGCAG
CTTCCTCAACGTCGTCGTGCATCGCCTGCCGAAGATGATGGAGCGCAACTGGAAGGCCGAAGCCCGCGAAGCGCTCGGGC
TGGAGCCGGAACCCAAGCAGGCGACCTACAACCTGGTGCTGCCGAATTCGGCGTGCCCGCGCTGCGGCCACGAGATCCGC
CCCTGGGAAAACATCCCGCTGGTCAGCTACCTGGCGCTGGGCGGCAAGTGCTCGTCCTGCAAGGCCGCCATCGGCAAACG
CTACCCCCTGGTGGAACTGGCCACCGCGCTGCTTTCCGGCTACGTCGCCTGGCATTTCGGCTTCACCTGGCAGGCGGGCG
CGATGCTCCTGCTGACCTGGGGTCTGCTGGCGATGAGCCTGATCGATGCCGATCACCAACTGCTGCCGGACGTGCTGGTG
CTGCCGTTGCTCTGGCTGGGCCTGATCGCCAACCATTTCGGCCTCTTCGCCAGCCTCGACGATGCGCTGTTCGGCGCGGT
GTTCGGCTACCTGAGCCTGTGGTCGGTGTTCTGGCTGTTCAAGCTGGTGACCGGCAAGGAGGGCATGGGCTACGGCGACT
TCAAGCTGCTGGCCATGCTCGGTGCCTGGGGCGGCTGGCAGATCCTGCCGCTGACCATCCTGCTGTCGTCGCTGGTCGGG
GCGATCCTCGGGGTGATCATGCTGCGCCTGCGCAACGCCGAAAGCGGCACGCCGATCCCCTTCGGTCCCTATCTGGCGAT
TGCCGGGTGGATTGCTTTGCTCTGGGGTGATCAAATAACCCGGACCTATCTGCAATTCGCCGGATTCAAATGA
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| pilD | Vibrio cholerae strain A1552 |
55.017 |
99.655 |
0.548 |
| pilD | Vibrio campbellii strain DS40M4 |
53.497 |
98.621 |
0.528 |
| pilD | Acinetobacter nosocomialis M2 |
50.352 |
97.931 |
0.493 |
| pilD | Acinetobacter baumannii D1279779 |
50.352 |
97.931 |
0.493 |
| pilD | Neisseria gonorrhoeae MS11 |
49.281 |
95.862 |
0.472 |