Detailed information    

insolico Bioinformatically predicted

Overview

Name   comGC   Type   Machinery gene
Locus tag   QFC96_RS03425 Genome accession   NZ_CP123581
Coordinates   661426..661734 (+) Length   102 a.a.
NCBI ID   WP_004270901.1    Uniprot ID   A0AAJ0LFY3
Organism   Latilactobacillus curvatus strain ZHA1     
Function   dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 656426..666734
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QFC96_RS03385 (QFC96_03385) - 656708..656947 (-) 240 WP_004270892.1 cytochrome b5 domain-containing protein -
  QFC96_RS03390 (QFC96_03390) - 657142..657477 (+) 336 WP_275780570.1 hypothetical protein -
  QFC96_RS03400 (QFC96_03400) - 657658..658035 (-) 378 WP_056965888.1 hypothetical protein -
  QFC96_RS03405 (QFC96_03405) - 658138..658638 (+) 501 WP_056965890.1 VanZ family protein -
  QFC96_RS03410 (QFC96_03410) - 658728..659459 (+) 732 WP_004270897.1 YebC/PmpR family DNA-binding transcriptional regulator -
  QFC96_RS03415 (QFC96_03415) comGA 659563..660438 (+) 876 WP_004270904.1 competence type IV pilus ATPase ComGA Machinery gene
  QFC96_RS03420 (QFC96_03420) comGB 660428..661429 (+) 1002 WP_283534321.1 type II secretion system F family protein Machinery gene
  QFC96_RS03425 (QFC96_03425) comGC 661426..661734 (+) 309 WP_004270901.1 prepilin-type N-terminal cleavage/methylation domain-containing protein Machinery gene
  QFC96_RS03430 (QFC96_03430) - 661715..662158 (+) 444 WP_039099484.1 type II secretion system protein -
  QFC96_RS03435 (QFC96_03435) - 662145..662450 (+) 306 WP_283534322.1 hypothetical protein -
  QFC96_RS03440 (QFC96_03440) - 662521..662901 (+) 381 WP_004270914.1 ComGF family competence protein -
  QFC96_RS03445 (QFC96_03445) - 662879..663202 (+) 324 WP_254670611.1 hypothetical protein -
  QFC96_RS03450 (QFC96_03450) - 663318..664337 (+) 1020 WP_307722871.1 class I SAM-dependent methyltransferase -
  QFC96_RS03455 (QFC96_03455) - 664359..665552 (+) 1194 WP_283534323.1 acetate kinase -
  QFC96_RS03460 (QFC96_03460) - 665612..666064 (+) 453 WP_283534324.1 laaL -

Sequence

Protein


Download         Length: 102 a.a.        Molecular weight: 11238.13 Da        Isoelectric Point: 9.6264

>NTDB_id=821370 QFC96_RS03425 WP_004270901.1 661426..661734(+) (comGC) [Latilactobacillus curvatus strain ZHA1]
MKKKRNAFTLIEMVVVLAVIAMLVLLIAPNLMHQKETAEQKTDTALVATIQTQVELAEDDGKTVSSLADLASGEKYLTNN
QVKQAEKRGITIKDNKVVQNTK

Nucleotide


Download         Length: 309 bp        

>NTDB_id=821370 QFC96_RS03425 WP_004270901.1 661426..661734(+) (comGC) [Latilactobacillus curvatus strain ZHA1]
ATGAAGAAGAAAAGAAATGCATTTACATTGATCGAAATGGTCGTTGTGCTAGCTGTGATAGCAATGTTAGTCTTGTTAAT
TGCACCTAATTTAATGCATCAGAAAGAGACAGCTGAGCAAAAAACGGATACGGCTCTAGTGGCAACGATTCAAACACAAG
TTGAATTAGCTGAGGATGACGGTAAAACGGTGTCGAGTCTAGCCGATTTAGCATCAGGTGAAAAATATTTAACCAATAAT
CAGGTTAAACAAGCTGAAAAACGCGGCATAACAATTAAGGATAATAAAGTTGTTCAAAATACAAAATAA

Domains

Predicted by InterproScan.

Prokaryotic N-terminal methylation motif (N_methyl)

(2-27)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comGC Latilactobacillus sakei subsp. sakei 23K

60

98.039

0.588