Detailed information    

insolico Bioinformatically predicted

Overview

Name   comFC   Type   Machinery gene
Locus tag   QEP22_RS11555 Genome accession   NZ_CP123578
Coordinates   2128920..2129417 (-) Length   165 a.a.
NCBI ID   WP_280560580.1    Uniprot ID   -
Organism   Priestia megaterium strain HyangYak-01     
Function   ssDNA transport into the cell (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2123920..2134417
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QEP22_RS11520 csrA 2124362..2124592 (-) 231 WP_013085431.1 carbon storage regulator CsrA -
  QEP22_RS11525 fliW 2124618..2125040 (-) 423 WP_043977425.1 flagellar assembly protein FliW -
  QEP22_RS11530 flgL 2125122..2126003 (-) 882 WP_043977427.1 flagellar hook-associated protein FlgL -
  QEP22_RS11535 flgK 2126006..2127529 (-) 1524 WP_230184022.1 flagellar hook-associated protein FlgK -
  QEP22_RS11540 - 2127548..2128009 (-) 462 WP_241771338.1 flagellar protein FlgN -
  QEP22_RS11545 flgM 2128031..2128285 (-) 255 WP_014457790.1 flagellar biosynthesis anti-sigma factor FlgM -
  QEP22_RS11550 - 2128445..2128858 (-) 414 WP_162215092.1 TIGR03826 family flagellar region protein -
  QEP22_RS11555 comFC 2128920..2129417 (-) 498 WP_280560580.1 phosphoribosyltransferase family protein Machinery gene
  QEP22_RS11560 - 2129609..2131099 (-) 1491 WP_280560581.1 DEAD/DEAH box helicase -
  QEP22_RS11565 - 2131197..2132042 (-) 846 WP_043977440.1 DegV family protein -
  QEP22_RS11570 - 2132149..2132586 (-) 438 WP_043977443.1 YaaR family protein -
  QEP22_RS11575 fliS 2132700..2133131 (-) 432 WP_280560764.1 flagellar export chaperone FliS -
  QEP22_RS11580 - 2133554..2134237 (-) 684 WP_013059772.1 response regulator transcription factor -

Sequence

Protein


Download         Length: 165 a.a.        Molecular weight: 19258.08 Da        Isoelectric Point: 9.3578

>NTDB_id=821317 QEP22_RS11555 WP_280560580.1 2128920..2129417(-) (comFC) [Priestia megaterium strain HyangYak-01]
MDCQKWNDASFFNRSLYTYNDFMQSIIERFKFQGDYKIIQAFKEQWYKFYKKECNPKAILVPIPLTDERLYERGFNQSLA
LAELISDNIEVPLVRCSGTKQSKKNRRSRLAERLEFKVVNSSMVTNQEFLLIDDIYTTGATVRQAANCLQEAGARSVRSL
TLIRA

Nucleotide


Download         Length: 498 bp        

>NTDB_id=821317 QEP22_RS11555 WP_280560580.1 2128920..2129417(-) (comFC) [Priestia megaterium strain HyangYak-01]
ATGGACTGTCAGAAATGGAATGATGCTTCTTTTTTCAACCGTTCTCTTTATACGTACAATGATTTTATGCAAAGCATAAT
AGAACGTTTTAAATTTCAAGGAGATTATAAAATTATCCAAGCATTCAAGGAGCAGTGGTATAAGTTCTATAAAAAAGAAT
GTAATCCAAAAGCTATACTAGTTCCTATACCTTTAACGGACGAGAGATTATATGAGAGAGGGTTTAACCAATCTTTAGCG
CTAGCTGAACTGATCAGTGACAACATAGAAGTGCCTCTTGTTCGCTGTTCAGGAACAAAGCAATCAAAGAAAAATAGGCG
AAGTCGGCTGGCAGAAAGACTGGAATTTAAAGTAGTCAATTCCTCAATGGTTACGAATCAAGAATTTCTCTTGATTGATG
ATATTTATACAACAGGAGCAACCGTGCGCCAAGCGGCAAATTGTTTGCAGGAAGCTGGGGCACGTTCAGTTCGTTCGCTC
ACTTTAATTCGTGCATGA

Domains

Predicted by InterproScan.

Phosphoribosyl transferase domain (Pribosyltran)

(78-164)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comFC Bacillus subtilis subsp. subtilis str. 168

46.512

100

0.485
  comFC/cflB Streptococcus pneumoniae Rx1

36.31

100

0.37
  comFC/cflB Streptococcus pneumoniae D39

36.31

100

0.37
  comFC/cflB Streptococcus pneumoniae R6

36.31

100

0.37
  comFC/cflB Streptococcus pneumoniae TIGR4

36.31

100

0.37