NTDB

Overview

Name	recG	Type	Machinery gene
Locus tag	R5030_RS07825	Genome accession	NZ_CP137493
Coordinates	1667462..1669537 (+)	Length	691 a.a.
NCBI ID	WP_033938975.1	Uniprot ID	-
Organism	Pseudomonas aeruginosa strain HPA1346
Function	homologous recombination (predicted from homology) Homologous recombination

Genomic Context

Location: 1662462..1674537

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
R5030_RS07795 (R5030_07795)	-	1662883..1663263 (+)	381	WP_003096609.1	RidA family protein	-
R5030_RS07800 (R5030_07800)	-	1663318..1664050 (+)	733	Protein_1526	hypothetical protein	-
R5030_RS07805 (R5030_07805)	-	1664057..1664677 (-)	621	WP_003096613.1	LysE family translocator	-
R5030_RS07810 (R5030_07810)	-	1664744..1665544 (-)	801	WP_003096615.1	AraC family transcriptional regulator	-
R5030_RS07815 (R5030_07815)	-	1665544..1666395 (-)	852	WP_003121310.1	SDR family oxidoreductase	-
R5030_RS07820 (R5030_07820)	oxyR	1666533..1667465 (+)	933	WP_003096622.1	oxidative stress transcriptional regulator OxyR	-
R5030_RS07825 (R5030_07825)	recG	1667462..1669537 (+)	2076	WP_033938975.1	ATP-dependent DNA helicase RecG	Machinery gene
R5030_RS07830 (R5030_07830)	-	1669627..1671036 (+)	1410	WP_033938976.1	aminoacyl-tRNA deacylase and HDOD domain-containing protein	-
R5030_RS07835 (R5030_07835)	-	1671108..1671500 (-)	393	WP_003096629.1	hypothetical protein	-
R5030_RS07840 (R5030_07840)	-	1671975..1672364 (-)	390	WP_031691137.1	hypothetical protein	-
R5030_RS07845 (R5030_07845)	-	1672351..1672824 (-)	474	WP_031691139.1	Panacea domain-containing protein	-
R5030_RS07850 (R5030_07850)	-	1673228..1673464 (+)	237	WP_031691141.1	hypothetical protein	-
R5030_RS32555	-	1673644..1673733 (-)	90	Protein_1537	hypothetical protein	-
R5030_RS07855 (R5030_07855)	-	1673748..1673972 (-)	225	WP_003129771.1	DUF7364 domain-containing protein	-

Sequence

Protein

Download Length: 691 a.a. Molecular weight: 76106.81 Da Isoelectric Point: 7.4218

                                >NTDB_id=820963 R5030_RS07825 WP_033938975.1 1667462..1669537(+) (recG) [Pseudomonas aeruginosa strain HPA1346]

MTELSRVPVTALKGVGAALAEKLARVGLETLQDILFHLPLRYQDRTRVTAIGALRPGADAVVGGVVAGADVVMGRRRSLL

VRLQDGSGTLSLRFYHFSQAQKDGLKRGTHLRCYGEVRPGASGLEIYHPEYRALNGDEPIPVEQTLTPIYPTTEGLTQQR

LRQLSQQALAMLGPSSLPDWLPAELARDYQLGPLDQAIRYLHRPPPDADIEELAEGRHWAQLRLAFEELLTHQLSLQRLR

EAVRSQAAPRLPAASRLPKRFLANLGFQPTGAQRRVGAEIAYDLAQDEPMLRLVQGDVGAGKTVVAALAALQAIEAGYQV

ALMAPTEILAEQHFLNFSKWLQPLDIEVAWLAGKLKGKARAAALERIGDGAPMVVGTHALFQDEVKFKRLALAIIDEQHR

FGVQQRLALRQKGVDGRLCPHQLIMTATPIPRTLAMSAYADLDTSILDELPPGRTPVNTVLVADSRRIEVIERVRAACRE

GRQAYWVCTLIEESEELTCQAAETTYEELSSALGELRVGLIHGRMKPADKAVVMEAFKEGMLQLLVATTVIEVGVDVPNA

SLMIIENPERLGLAQLHQLRGRVGRGSAASHCVLLYHPPLSQIGRERLGIMRETSDGFVIAEKDLELRGPGEMLGTRQTG

LLQFKVADLMRDADLLPAVRDAAQSLLAHWPQHVSPLLERWLRHGQQYGQV

Nucleotide

Download Length: 2076 bp

                                >NTDB_id=820963 R5030_RS07825 WP_033938975.1 1667462..1669537(+) (recG) [Pseudomonas aeruginosa strain HPA1346]

ATGACCGAGCTGTCCAGGGTCCCGGTCACCGCGCTAAAGGGCGTAGGCGCCGCGCTGGCGGAGAAGCTCGCTCGGGTAGG

CCTGGAAACCCTGCAGGACATCCTGTTCCACCTGCCCCTGCGCTACCAGGACCGTACCCGCGTCACCGCCATCGGCGCAC

TGCGGCCAGGGGCCGACGCGGTGGTCGGGGGCGTGGTGGCCGGCGCCGACGTGGTGATGGGGCGCCGCCGCAGCCTGCTG

GTGCGCCTACAGGACGGCAGCGGCACCCTGAGCCTGCGCTTCTACCATTTCAGCCAGGCGCAGAAGGACGGCCTCAAGCG

CGGCACCCACCTGCGCTGCTACGGCGAAGTCCGGCCGGGTGCATCGGGCCTGGAGATCTACCATCCGGAATACCGCGCGC

TGAACGGCGACGAACCGATTCCGGTGGAGCAGACCCTGACGCCGATCTACCCGACTACCGAAGGACTCACCCAGCAGCGC

CTGCGCCAGTTGAGCCAACAGGCCCTGGCCATGCTCGGTCCCAGCAGCCTGCCCGACTGGCTGCCGGCGGAACTGGCCCG

CGATTACCAACTTGGCCCGCTCGACCAGGCGATCCGCTACCTGCACCGGCCGCCGCCGGATGCCGACATCGAGGAACTGG

CCGAAGGCCGGCACTGGGCGCAGTTGCGCCTGGCCTTCGAAGAACTGCTGACCCACCAGTTATCCCTGCAGCGCCTGCGC

GAAGCCGTGCGTTCGCAGGCAGCGCCGCGCTTGCCGGCGGCCAGCCGCTTGCCGAAACGCTTCCTTGCCAACCTCGGCTT

CCAGCCGACCGGCGCGCAACGCCGGGTCGGCGCGGAGATCGCCTACGACCTGGCCCAGGACGAACCGATGCTGCGCCTGG

TGCAAGGCGACGTCGGCGCCGGCAAGACCGTGGTCGCCGCCCTCGCCGCCCTGCAAGCCATAGAGGCCGGCTACCAGGTG

GCGCTGATGGCGCCGACCGAGATCCTCGCCGAGCAGCATTTCCTCAACTTCAGCAAGTGGCTCCAGCCGCTGGACATCGA

AGTCGCCTGGCTGGCCGGCAAGCTCAAGGGCAAGGCCCGCGCGGCGGCACTGGAACGCATCGGCGACGGCGCGCCGATGG

TGGTCGGCACCCACGCGCTGTTCCAGGATGAAGTGAAATTCAAGCGCCTTGCACTGGCGATCATCGACGAACAGCACCGC

TTCGGCGTGCAGCAGCGCCTGGCCCTGCGCCAGAAGGGCGTGGACGGCAGGCTCTGCCCGCACCAGTTGATCATGACCGC

CACGCCGATCCCGCGGACCCTGGCGATGAGCGCCTATGCCGACCTCGACACCTCGATCCTCGACGAGCTGCCGCCCGGGC

GTACCCCGGTGAATACCGTGCTGGTGGCCGACAGCCGCCGTATCGAGGTGATCGAGCGAGTCCGCGCGGCTTGCCGCGAA

GGGCGCCAGGCCTACTGGGTGTGTACCCTGATCGAAGAGTCCGAGGAACTTACCTGCCAGGCCGCCGAGACCACCTACGA

AGAGCTTTCCTCGGCGCTGGGCGAACTGCGCGTCGGCCTGATCCACGGGCGCATGAAGCCGGCGGACAAGGCTGTGGTGA

TGGAGGCCTTCAAGGAAGGCATGTTGCAACTGCTGGTGGCGACCACGGTGATCGAGGTCGGCGTCGACGTGCCCAACGCC

AGCCTGATGATCATCGAGAACCCTGAGCGCCTTGGCCTGGCCCAACTGCACCAGTTGCGCGGCCGGGTTGGCCGGGGCAG

CGCCGCCAGCCACTGCGTGCTGCTCTACCACCCACCGCTGTCGCAGATCGGCCGCGAGCGGCTGGGCATCATGCGCGAAA

CCAGCGACGGCTTCGTCATCGCCGAGAAGGACCTGGAATTGCGCGGCCCCGGCGAAATGCTCGGCACCCGCCAGACCGGC

CTGCTGCAATTCAAGGTCGCCGACCTGATGCGCGACGCAGATCTGCTGCCGGCGGTCCGCGATGCCGCCCAATCCCTCCT

GGCGCACTGGCCGCAGCATGTCAGCCCGCTGCTCGAACGGTGGTTGCGCCACGGCCAGCAATACGGTCAAGTGTGA

Domains

Predicted by InterProScan.

DEAD/DEAH box helicase (DEAD)

(293-430)

Helicase conserved C-terminal domain (Helicase_C)

(479-586)

RecG wedge domain (RecG_wedge)

(12-170)

ATP-dependent DNA helicase RecG, domain 3, C-terminal (RecG_dom3_C)

(614-675)

Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.

3D structure

Source	ID	Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.

Visualization of predicted probability:

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	H_a-value
recG	Neisseria meningitidis strain C311	50.224	97.106	0.488
recG/mmsA	Streptococcus pneumoniae R6	40.868	96.671	0.395
recG/mmsA	Streptococcus pneumoniae R36A	40.868	96.671	0.395
recG	Bacillus subtilis subsp. subtilis str. 168	40.208	97.54	0.392

Detailed information NTG0820963