Detailed information    

insolico Bioinformatically predicted

Overview

Name   comA   Type   Regulator
Locus tag   R4707_RS11385 Genome accession   NZ_CP137113
Coordinates   174060..174224 (-) Length   54 a.a.
NCBI ID   WP_109701449.1    Uniprot ID   -
Organism   Streptococcus pneumoniae strain ZGX     
Function   processing and transport of ComC (predicted from homology)   
Competence regulation

Genomic Context

Location: 169060..179224
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  R4707_RS00865 - 169729..169971 (+) 243 WP_000710764.1 type B 50S ribosomal protein L31 -
  R4707_RS00870 - 170028..170246 (-) 219 WP_000028153.1 hypothetical protein -
  R4707_RS00875 - 170794..170795 (-) 2 WP_317830938.1 IS630 family transposase -
  R4707_RS00880 gdhA 171631..172977 (+) 1347 WP_000199566.1 NADP-specific glutamate dehydrogenase -
  R4707_RS00885 - 173473..173643 (-) 171 WP_000711942.1 hypothetical protein -
  R4707_RS00890 comA/nlmT 173656..173997 (-) 342 WP_231292389.1 ATP-binding cassette domain-containing protein Regulator
  R4707_RS11385 comA 174060..174224 (-) 165 WP_109701449.1 hypothetical protein Regulator
  R4707_RS00895 - 174250..174769 (-) 520 Protein_177 transposase -
  R4707_RS00900 - 174778..175492 (+) 715 Protein_178 IS630 family transposase -
  R4707_RS00905 - 175726..176178 (-) 453 Protein_179 hypothetical protein -
  R4707_RS00910 - 176180..176467 (-) 288 WP_000869754.1 hypothetical protein -
  R4707_RS00915 - 177052..178403 (+) 1352 WP_088804224.1 IS3-like element ISSpn4 family transposase -
  R4707_RS00920 - 178503..178901 (-) 399 Protein_182 ATP-binding cassette domain-containing protein -

Sequence

Protein


Download         Length: 54 a.a.        Molecular weight: 6025.02 Da        Isoelectric Point: 8.6616

>NTDB_id=820052 R4707_RS11385 WP_109701449.1 174060..174224(-) (comA) [Streptococcus pneumoniae strain ZGX]
MPSGLYKIDTGKVLFDGVNINQIDKKILSQNLGVVPQDSFLLNRSILDNITLKH

Nucleotide


Download         Length: 165 bp        

>NTDB_id=820052 R4707_RS11385 WP_109701449.1 174060..174224(-) (comA) [Streptococcus pneumoniae strain ZGX]
ATACCATCAGGATTATATAAGATTGATACAGGAAAAGTTTTATTTGATGGTGTAAATATTAATCAAATAGATAAAAAAAT
ATTAAGTCAAAATTTAGGAGTAGTTCCACAGGATTCATTTTTATTGAACCGAAGTATTCTTGATAACATAACTTTAAAGC
ACTAG

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comA Streptococcus mitis NCTC 12261

42.308

96.296

0.407
  comA Streptococcus pneumoniae Rx1

40.385

96.296

0.389
  comA Streptococcus pneumoniae D39

40.385

96.296

0.389
  comA Streptococcus pneumoniae R6

40.385

96.296

0.389
  comA Streptococcus mitis SK321

40.385

96.296

0.389