Detailed information    

insolico Bioinformatically predicted

Overview

Name   ruvA   Type   Machinery gene
Locus tag   R4707_RS06780 Genome accession   NZ_CP137113
Coordinates   1265951..1266544 (+) Length   197 a.a.
NCBI ID   WP_000271487.1    Uniprot ID   Q97SY4
Organism   Streptococcus pneumoniae strain ZGX     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1260951..1271544
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  R4707_RS06760 ribE 1262133..1262600 (-) 468 WP_001099502.1 6,7-dimethyl-8-ribityllumazine synthase -
  R4707_RS06765 - 1262601..1263806 (-) 1206 WP_000456639.1 bifunctional 3,4-dihydroxy-2-butanone-4-phosphate synthase/GTP cyclohydrolase II -
  R4707_RS06770 ribE 1263826..1264461 (-) 636 WP_000493841.1 riboflavin synthase -
  R4707_RS06775 ribD 1264446..1265546 (-) 1101 WP_001284095.1 bifunctional diaminohydroxyphosphoribosylaminopyrimidine deaminase/5-amino-6-(5-phosphoribosylamino)uracil reductase RibD -
  R4707_RS06780 ruvA 1265951..1266544 (+) 594 WP_000271487.1 Holliday junction branch migration protein RuvA Machinery gene
  R4707_RS06785 - 1266554..1267117 (+) 564 WP_000166585.1 DNA-3-methyladenine glycosylase I -
  R4707_RS06790 - 1267114..1267791 (+) 678 WP_044789272.1 CPBP family intramembrane glutamic endopeptidase -
  R4707_RS06795 - 1267928..1268959 (-) 1032 WP_081542810.1 S66 peptidase family protein -
  R4707_RS06800 - 1269214..1269897 (-) 684 WP_050212588.1 DUF1129 domain-containing protein -
  R4707_RS06805 - 1269909..1270853 (-) 945 WP_000815629.1 magnesium transporter CorA family protein -

Sequence

Protein


Download         Length: 197 a.a.        Molecular weight: 21606.10 Da        Isoelectric Point: 6.7338

>NTDB_id=820016 R4707_RS06780 WP_000271487.1 1265951..1266544(+) (ruvA) [Streptococcus pneumoniae strain ZGX]
MYAYLKGIITKITAKYIVLETNGIGYILHVANPYAYSGQVNQEAQIYVHQVVREDAHLLYGFRSEDEKKLFLSLISVSGI
GPVSALAIIAADDNAGLVQAIETKNITYLTKFPKIGKKTAQQMVLDLEGKVVVAGDDLPAKVAVQASAENQELEEAMEAM
LALGYKATELKKIKKFFEGTTDTAENYIKSALKMLVK

Nucleotide


Download         Length: 594 bp        

>NTDB_id=820016 R4707_RS06780 WP_000271487.1 1265951..1266544(+) (ruvA) [Streptococcus pneumoniae strain ZGX]
ATGTACGCATATTTAAAAGGAATCATTACCAAAATTACTGCCAAATACATTGTTCTTGAAACCAATGGTATTGGTTATAT
CCTGCATGTGGCCAATCCTTATGCCTATTCAGGTCAGGTTAATCAGGAGGCTCAGATTTATGTGCATCAGGTTGTGCGTG
AGGACGCCCATTTGCTTTATGGATTTCGCTCAGAGGATGAGAAAAAGCTCTTTCTTAGTCTAATTTCGGTCTCTGGGATT
GGTCCTGTATCAGCTCTTGCTATTATCGCTGCTGATGACAATGCTGGCTTGGTTCAAGCCATTGAAACCAAGAACATCAC
CTACTTGACCAAGTTCCCTAAAATTGGCAAGAAAACAGCCCAGCAGATGGTGCTGGACTTGGAAGGCAAGGTAGTAGTTG
CAGGAGATGACCTTCCTGCCAAGGTCGCAGTGCAAGCAAGTGCTGAAAACCAAGAATTGGAAGAAGCTATGGAAGCCATG
TTGGCTCTGGGCTACAAGGCAACAGAGCTCAAGAAAATCAAGAAATTCTTTGAAGGAACGACAGATACAGCTGAGAACTA
TATCAAGTCGGCCCTTAAAATGTTGGTCAAATAG

Domains

Predicted by InterProScan.

Helix-hairpin-helix domain (HHH_5)

(71-127)

RuvA N terminal domain (RuvA_N)

(1-61)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB Q97SY4

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ruvA Streptococcus pneumoniae TIGR4

100

100

1
  ruvA Streptococcus pneumoniae R6

99.492

100

0.995
  ruvA Streptococcus pneumoniae D39

99.492

100

0.995
  ruvA Bacillus subtilis subsp. subtilis str. 168

39.806

100

0.416