Detailed information    

insolico Bioinformatically predicted

Overview

Name   comR   Type   Regulator
Locus tag   R4707_RS04335 Genome accession   NZ_CP137113
Coordinates   810062..810961 (-) Length   299 a.a.
NCBI ID   WP_081542924.1    Uniprot ID   -
Organism   Streptococcus pneumoniae strain ZGX     
Function   activate transcription of comX (predicted from homology)   
Competence regulation

Genomic Context

Location: 805062..815961
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  R4707_RS04310 rsmA 805392..806264 (-) 873 WP_001216865.1 16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))- dimethyltransferase RsmA -
  R4707_RS04315 - 806395..806703 (-) 309 WP_180377188.1 hypothetical protein -
  R4707_RS04320 - 806696..807337 (-) 642 WP_000565531.1 ABC transporter ATP-binding protein -
  R4707_RS04325 - 807339..809369 (-) 2031 WP_162498171.1 bacteriocin-associated integral membrane family protein -
  R4707_RS04330 - 809446..809742 (-) 297 WP_000815394.1 lactococcin 972 family bacteriocin -
  R4707_RS04335 comR 810062..810961 (-) 900 WP_081542924.1 helix-turn-helix transcriptional regulator Regulator
  R4707_RS04340 rnmV 811033..811593 (-) 561 WP_050103785.1 ribonuclease M5 -
  R4707_RS04345 - 811593..812366 (-) 774 WP_000575606.1 TatD family hydrolase -
  R4707_RS04350 - 812672..813391 (-) 720 Protein_839 DUF1542 domain-containing protein -
  R4707_RS04355 rpmH 813600..813734 (-) 135 WP_000831905.1 50S ribosomal protein L34 -
  R4707_RS04360 - 813879..815093 (-) 1215 WP_000666469.1 pyridoxal phosphate-dependent aminotransferase -
  R4707_RS04365 - 815249..815542 (-) 294 WP_044814358.1 hypothetical protein -

Sequence

Protein


Download         Length: 299 a.a.        Molecular weight: 35350.13 Da        Isoelectric Point: 4.8989

>NTDB_id=819978 R4707_RS04335 WP_081542924.1 810062..810961(-) (comR) [Streptococcus pneumoniae strain ZGX]
MLIGQKIKEIRIEKGISRPDFCGDEQELTVRQLSRIESGASQPSLPKLDYIARRLGVPVYSLMPDFSALPSAYLELKYQI
LREPIYGKEEEYDKKEACLEEIYKTYFDNLPKEEQLACEVLQACLDTSRTRRPEYAELILEEHMPQIIEKEVYSTNDMLL
IRLFFYQMLIRKDLAKFINQIEKLMLFLLEQKKVTKLENFFIIRDTLISGMCCLEKVGVTDCFNDYLSCLQEIMDKTQNY
QKKPLIFMFLWKQALREERDFSLAESFYQSSKTFAQLIGDGFLVKKLTEEWQEDVKKYL

Nucleotide


Download         Length: 900 bp        

>NTDB_id=819978 R4707_RS04335 WP_081542924.1 810062..810961(-) (comR) [Streptococcus pneumoniae strain ZGX]
ATGTTAATTGGTCAAAAAATTAAAGAGATTCGGATAGAAAAAGGAATTAGTCGTCCAGATTTTTGTGGAGATGAGCAAGA
ACTGACAGTTCGTCAACTGTCGCGAATTGAAAGTGGAGCTTCGCAACCGAGTTTGCCCAAGTTAGACTATATTGCTCGCC
GGCTAGGAGTTCCAGTTTATAGCCTTATGCCGGATTTTTCAGCTCTTCCTTCTGCTTATTTAGAATTGAAATACCAGATT
TTACGTGAACCAATCTATGGTAAAGAAGAGGAGTACGATAAGAAGGAAGCGTGTTTGGAAGAGATTTATAAAACATACTT
TGATAATCTTCCTAAAGAAGAACAATTAGCATGTGAAGTATTGCAGGCGTGTTTGGATACTTCTAGAACTAGAAGGCCTG
AATATGCAGAGTTAATACTTGAGGAACATATGCCTCAGATCATAGAAAAAGAAGTTTATTCAACAAATGATATGTTGTTG
ATTCGTTTGTTTTTTTATCAAATGCTCATTAGAAAAGATCTTGCCAAATTTATAAATCAAATCGAAAAGCTAATGCTCTT
TCTTTTGGAACAGAAAAAGGTAACTAAATTAGAAAACTTCTTTATAATTAGAGATACTCTTATTTCAGGAATGTGTTGTC
TTGAAAAGGTAGGAGTAACTGATTGTTTTAATGATTATCTATCGTGTTTACAAGAAATTATGGATAAAACTCAAAATTAT
CAAAAGAAACCTCTTATATTTATGTTTTTGTGGAAGCAAGCATTAAGAGAAGAAAGAGATTTTAGTTTAGCTGAATCATT
TTATCAGTCTTCTAAAACATTTGCGCAGCTAATTGGAGATGGATTTCTAGTAAAGAAATTGACAGAGGAATGGCAAGAGG
ATGTCAAAAAATATTTATAA

Domains

Predicted by InterProScan.

ComR tetratricopeptide (ComR_TPR)

(70-291)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comR Streptococcus mutans UA159

37.415

98.328

0.368
  comR Streptococcus pyogenes MGAS8232

36.242

99.666

0.361