Detailed information    

insolico Bioinformatically predicted

Overview

Name   comGA   Type   Machinery gene
Locus tag   QAO39_RS05495 Genome accession   NZ_CP123158
Coordinates   1067140..1068114 (+) Length   324 a.a.
NCBI ID   WP_000697217.1    Uniprot ID   A0AAN2D5C1
Organism   Staphylococcus aureus strain BE-MSSA9     
Function   dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1062140..1073114
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QAO39_RS05460 (QAO39_05460) rpmG 1062600..1062749 (+) 150 WP_001265709.1 50S ribosomal protein L33 -
  QAO39_RS05465 (QAO39_05465) - 1062958..1063497 (+) 540 WP_000164546.1 5-formyltetrahydrofolate cyclo-ligase -
  QAO39_RS05470 (QAO39_05470) - 1063509..1064972 (+) 1464 WP_001017867.1 rhomboid family protein -
  QAO39_RS05475 (QAO39_05475) - 1064953..1065156 (+) 204 WP_000087561.1 YqgQ family protein -
  QAO39_RS05480 (QAO39_05480) - 1065153..1066139 (+) 987 WP_000161314.1 ROK family glucokinase -
  QAO39_RS05485 (QAO39_05485) - 1066139..1066468 (+) 330 WP_001018871.1 MTH1187 family thiamine-binding protein -
  QAO39_RS05490 (QAO39_05490) - 1066465..1067088 (+) 624 WP_001223008.1 MBL fold metallo-hydrolase -
  QAO39_RS05495 (QAO39_05495) comGA 1067140..1068114 (+) 975 WP_000697217.1 competence type IV pilus ATPase ComGA Machinery gene
  QAO39_RS05500 (QAO39_05500) comGB 1068086..1069156 (+) 1071 WP_000776422.1 competence type IV pilus assembly protein ComGB Machinery gene
  QAO39_RS05505 (QAO39_05505) comGC 1069170..1069481 (+) 312 WP_000472256.1 competence type IV pilus major pilin ComGC Machinery gene
  QAO39_RS05510 (QAO39_05510) comGD 1069459..1069905 (+) 447 WP_001788899.1 competence type IV pilus minor pilin ComGD Machinery gene
  QAO39_RS05515 (QAO39_05515) comGE 1069892..1070191 (+) 300 WP_000844413.1 hypothetical protein Machinery gene
  QAO39_RS05520 (QAO39_05520) comGF 1070109..1070606 (+) 498 WP_001829055.1 competence type IV pilus minor pilin ComGF Machinery gene
  QAO39_RS05525 (QAO39_05525) - 1070703..1070849 (+) 147 WP_001789879.1 hypothetical protein -
  QAO39_RS05530 (QAO39_05530) - 1070839..1071363 (+) 525 WP_001015121.1 shikimate kinase -
  QAO39_RS05535 (QAO39_05535) gcvT 1071522..1072613 (+) 1092 WP_165468756.1 glycine cleavage system aminomethyltransferase GcvT -

Sequence

Protein


Download         Length: 324 a.a.        Molecular weight: 36869.90 Da        Isoelectric Point: 8.8516

>NTDB_id=819698 QAO39_RS05495 WP_000697217.1 1067140..1068114(+) (comGA) [Staphylococcus aureus strain BE-MSSA9]
MKILFQEIINKAIEMKASDVHFIPVKNEVSIKFRINDNLEQYEQIGNSIYQKLLVYMKFQAGLDVSTQQVAQSGRYSYHF
NKIYFLRISTLPLSLGQESCVIRIAPQFFQQQKSTYKFNDFKHLMNKKQGLLLFSGPTGSGKSTLMYQMVSYANKALNLN
VISIEDPVEMQIPGIVQINVNDKAGINYVNSFKAILRCDPDVILIGEIRDKDVAKCVIQASLSGHLVLTTLHATDCKGAI
LRLLEMGISVQELIQATNLIINQRLVTTIKQQRQLVCEILSQQQLRYFFSHNHSLPSSFKNLEDKLDDMTKAGVICETTM
DKYI

Nucleotide


Download         Length: 975 bp        

>NTDB_id=819698 QAO39_RS05495 WP_000697217.1 1067140..1068114(+) (comGA) [Staphylococcus aureus strain BE-MSSA9]
TTGAAGATTCTATTTCAAGAAATAATTAATAAAGCGATAGAAATGAAAGCGAGTGATGTACATTTTATTCCAGTTAAAAA
TGAAGTAAGTATTAAATTTAGAATTAATGATAACTTGGAGCAGTATGAACAAATTGGGAATAGCATTTATCAAAAGTTAT
TAGTTTATATGAAGTTTCAAGCTGGGCTTGATGTTTCTACACAGCAAGTCGCACAGAGCGGTCGATATAGTTACCATTTC
AATAAAATATATTTTTTGAGAATATCAACTTTACCATTGTCACTTGGCCAAGAAAGTTGTGTTATCAGAATTGCACCTCA
ATTTTTTCAACAACAGAAATCAACTTATAAATTCAATGATTTTAAACACCTCATGAATAAGAAACAAGGATTACTATTGT
TTAGTGGGCCAACTGGTTCAGGAAAGAGTACATTAATGTATCAAATGGTCTCATACGCGAATAAAGCCTTGAATTTAAAT
GTAATTTCTATAGAGGATCCTGTAGAGATGCAAATTCCTGGTATCGTCCAAATTAATGTGAATGATAAAGCTGGTATTAA
CTATGTAAATTCGTTTAAAGCTATTTTAAGATGTGATCCTGATGTTATTTTAATAGGTGAAATCAGAGATAAAGATGTTG
CCAAGTGTGTTATACAGGCTAGTTTAAGTGGTCACCTTGTTCTGACTACATTGCATGCAACTGATTGTAAAGGTGCTATT
TTAAGGCTATTAGAAATGGGCATTTCTGTACAAGAATTGATACAGGCAACTAACTTAATTATAAACCAACGACTTGTAAC
TACTATTAAACAACAGCGACAATTAGTATGTGAAATTCTATCTCAGCAACAACTCCGATATTTCTTTTCCCATAATCATT
CATTACCATCATCATTTAAGAACTTAGAAGATAAACTTGATGATATGACAAAAGCAGGTGTCATTTGTGAAACTACAATG
GATAAATACATTTAA

Domains

Predicted by InterproScan.

Type II/IV secretion system protein (T2SSE)

(7-267)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comGA Staphylococcus aureus MW2

99.691

100

0.997
  comGA Staphylococcus aureus N315

99.691

100

0.997