Detailed information    

insolico Bioinformatically predicted

Overview

Name   comGD   Type   Machinery gene
Locus tag   QAO39_RS05510 Genome accession   NZ_CP123158
Coordinates   1069459..1069905 (+) Length   148 a.a.
NCBI ID   WP_001788899.1    Uniprot ID   -
Organism   Staphylococcus aureus strain BE-MSSA9     
Function   dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1064459..1074905
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QAO39_RS05475 (QAO39_05475) - 1064953..1065156 (+) 204 WP_000087561.1 YqgQ family protein -
  QAO39_RS05480 (QAO39_05480) - 1065153..1066139 (+) 987 WP_000161314.1 ROK family glucokinase -
  QAO39_RS05485 (QAO39_05485) - 1066139..1066468 (+) 330 WP_001018871.1 MTH1187 family thiamine-binding protein -
  QAO39_RS05490 (QAO39_05490) - 1066465..1067088 (+) 624 WP_001223008.1 MBL fold metallo-hydrolase -
  QAO39_RS05495 (QAO39_05495) comGA 1067140..1068114 (+) 975 WP_000697217.1 competence type IV pilus ATPase ComGA Machinery gene
  QAO39_RS05500 (QAO39_05500) comGB 1068086..1069156 (+) 1071 WP_000776422.1 competence type IV pilus assembly protein ComGB Machinery gene
  QAO39_RS05505 (QAO39_05505) comGC 1069170..1069481 (+) 312 WP_000472256.1 competence type IV pilus major pilin ComGC Machinery gene
  QAO39_RS05510 (QAO39_05510) comGD 1069459..1069905 (+) 447 WP_001788899.1 competence type IV pilus minor pilin ComGD Machinery gene
  QAO39_RS05515 (QAO39_05515) comGE 1069892..1070191 (+) 300 WP_000844413.1 hypothetical protein Machinery gene
  QAO39_RS05520 (QAO39_05520) comGF 1070109..1070606 (+) 498 WP_001829055.1 competence type IV pilus minor pilin ComGF Machinery gene
  QAO39_RS05525 (QAO39_05525) - 1070703..1070849 (+) 147 WP_001789879.1 hypothetical protein -
  QAO39_RS05530 (QAO39_05530) - 1070839..1071363 (+) 525 WP_001015121.1 shikimate kinase -
  QAO39_RS05535 (QAO39_05535) gcvT 1071522..1072613 (+) 1092 WP_165468756.1 glycine cleavage system aminomethyltransferase GcvT -
  QAO39_RS05540 (QAO39_05540) gcvPA 1072633..1073979 (+) 1347 WP_000019687.1 aminomethyl-transferring glycine dehydrogenase subunit GcvPA -

Sequence

Protein


Download         Length: 148 a.a.        Molecular weight: 17165.33 Da        Isoelectric Point: 10.3312

>NTDB_id=819701 QAO39_RS05510 WP_001788899.1 1069459..1069905(+) (comGD) [Staphylococcus aureus strain BE-MSSA9]
MEKQLQIRKQSAFTMIEMLVVMMLISIFLLLTMTSKGLSNLRVIDDEANIISFITELNYIKSQAIANQGYINVRFYENSD
TIKVIENNKIRFLKLKVGKIINVAKVDIIAFDKKGNINKFGSITIDNNNSIYRIIFHIEKGRIRYEKL

Nucleotide


Download         Length: 447 bp        

>NTDB_id=819701 QAO39_RS05510 WP_001788899.1 1069459..1069905(+) (comGD) [Staphylococcus aureus strain BE-MSSA9]
ATGGAGAAGCAGTTGCAAATTAGAAAGCAGTCAGCATTTACTATGATTGAGATGCTTGTGGTAATGATGTTAATCAGTAT
ATTTTTACTTTTGACAATGACATCTAAAGGATTAAGCAATCTTAGAGTAATAGATGATGAGGCAAATATCATTTCTTTTA
TTACTGAATTGAATTATATTAAGTCGCAAGCTATAGCAAATCAAGGATATATCAATGTTAGATTTTATGAAAACAGTGAC
ACTATTAAAGTAATAGAGAATAATAAAATACGATTTCTAAAATTAAAAGTAGGCAAAATAATTAATGTTGCAAAAGTTGA
TATTATTGCCTTTGATAAAAAAGGGAATATCAATAAATTTGGTAGTATAACAATTGACAATAACAATTCAATTTATAGAA
TAATATTCCATATTGAAAAAGGAAGAATTCGTTATGAAAAGCTATAA

Domains

Predicted by InterproScan.

Prokaryotic N-terminal methylation motif (N_methyl)

(8-31)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comGD Staphylococcus aureus MW2

100

100

1
  comGD Staphylococcus aureus N315

100

100

1