Detailed information    

insolico Bioinformatically predicted

Overview

Name   ruvA   Type   Machinery gene
Locus tag   R4702_RS04235 Genome accession   NZ_CP137106
Coordinates   849554..850147 (-) Length   197 a.a.
NCBI ID   WP_000271487.1    Uniprot ID   Q97SY4
Organism   Streptococcus pneumoniae strain 16P4028     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 844554..855147
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  R4702_RS04210 - 845227..846171 (+) 945 WP_000815629.1 magnesium transporter CorA family protein -
  R4702_RS04215 - 846183..846866 (+) 684 WP_000078022.1 DUF1129 domain-containing protein -
  R4702_RS04220 - 847121..848152 (+) 1032 WP_050205209.1 S66 peptidase family protein -
  R4702_RS04225 - 848307..848984 (-) 678 WP_000987438.1 CPBP family intramembrane glutamic endopeptidase -
  R4702_RS04230 - 848981..849544 (-) 564 WP_000166589.1 DNA-3-methyladenine glycosylase I -
  R4702_RS04235 ruvA 849554..850147 (-) 594 WP_000271487.1 Holliday junction branch migration protein RuvA Machinery gene
  R4702_RS04240 ribD 850552..851652 (+) 1101 WP_050220000.1 bifunctional diaminohydroxyphosphoribosylaminopyrimidine deaminase/5-amino-6-(5-phosphoribosylamino)uracil reductase RibD -
  R4702_RS04245 ribE 851637..852272 (+) 636 WP_000493842.1 riboflavin synthase -
  R4702_RS04250 - 852292..853497 (+) 1206 WP_001820536.1 bifunctional 3,4-dihydroxy-2-butanone-4-phosphate synthase/GTP cyclohydrolase II -
  R4702_RS04255 ribE 853498..853965 (+) 468 WP_001099502.1 6,7-dimethyl-8-ribityllumazine synthase -

Sequence

Protein


Download         Length: 197 a.a.        Molecular weight: 21606.10 Da        Isoelectric Point: 6.7338

>NTDB_id=819136 R4702_RS04235 WP_000271487.1 849554..850147(-) (ruvA) [Streptococcus pneumoniae strain 16P4028]
MYAYLKGIITKITAKYIVLETNGIGYILHVANPYAYSGQVNQEAQIYVHQVVREDAHLLYGFRSEDEKKLFLSLISVSGI
GPVSALAIIAADDNAGLVQAIETKNITYLTKFPKIGKKTAQQMVLDLEGKVVVAGDDLPAKVAVQASAENQELEEAMEAM
LALGYKATELKKIKKFFEGTTDTAENYIKSALKMLVK

Nucleotide


Download         Length: 594 bp        

>NTDB_id=819136 R4702_RS04235 WP_000271487.1 849554..850147(-) (ruvA) [Streptococcus pneumoniae strain 16P4028]
ATGTACGCATATTTAAAAGGAATCATTACCAAAATTACTGCCAAATACATTGTTCTTGAAACCAATGGTATTGGTTATAT
CCTGCATGTGGCCAATCCTTATGCCTATTCAGGTCAGGTTAATCAGGAGGCTCAGATTTATGTGCATCAGGTTGTGCGTG
AGGACGCCCATTTGCTTTATGGATTTCGCTCAGAGGATGAGAAAAAACTCTTTCTTAGTCTGATTTCGGTCTCTGGGATT
GGTCCTGTATCAGCTCTTGCTATTATCGCTGCTGATGACAATGCTGGCTTGGTTCAAGCCATTGAAACCAAGAACATCAC
CTACTTGACCAAGTTCCCTAAAATTGGCAAGAAAACAGCCCAGCAGATGGTGCTGGACTTGGAAGGCAAGGTAGTAGTTG
CAGGAGATGACCTTCCTGCCAAGGTCGCAGTGCAAGCAAGTGCTGAAAACCAAGAATTGGAAGAAGCTATGGAAGCCATG
TTGGCTCTGGGCTACAAGGCAACAGAGCTCAAGAAAATCAAGAAATTCTTTGAAGGAACGACAGATACAGCTGAGAACTA
TATCAAGTCGGCCCTTAAAATGTTGGTCAAATAG

Domains

Predicted by InterProScan.

Helix-hairpin-helix domain (HHH_5)

(71-127)

RuvA N terminal domain (RuvA_N)

(1-61)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB Q97SY4

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ruvA Streptococcus pneumoniae TIGR4

100

100

1
  ruvA Streptococcus pneumoniae R6

99.492

100

0.995
  ruvA Streptococcus pneumoniae D39

99.492

100

0.995
  ruvA Bacillus subtilis subsp. subtilis str. 168

39.806

100

0.416