Detailed information    

insolico Bioinformatically predicted

Overview

Name   comR   Type   Regulator
Locus tag   R4709_RS06835 Genome accession   NZ_CP137102
Coordinates   1322691..1323590 (+) Length   299 a.a.
NCBI ID   WP_050115346.1    Uniprot ID   -
Organism   Streptococcus pneumoniae strain 16H3071-2     
Function   activate transcription of comX (predicted from homology)   
Competence regulation

Genomic Context

Location: 1317691..1328590
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  R4709_RS06810 - 1318543..1319496 (+) 954 WP_317802425.1 IS30-like element ISSpn8 family transposase -
  R4709_RS06815 rpmH 1319664..1319798 (+) 135 WP_000831905.1 50S ribosomal protein L34 -
  R4709_RS06820 - 1320004..1320981 (+) 978 Protein_1320 DUF1542 domain-containing protein -
  R4709_RS06825 - 1321286..1322059 (+) 774 WP_000575633.1 TatD family hydrolase -
  R4709_RS06830 rnmV 1322059..1322619 (+) 561 WP_000660009.1 ribonuclease M5 -
  R4709_RS06835 comR 1322691..1323590 (+) 900 WP_050115346.1 helix-turn-helix transcriptional regulator Regulator
  R4709_RS06840 - 1323910..1324206 (+) 297 WP_000815393.1 lactococcin 972 family bacteriocin -
  R4709_RS06845 - 1324283..1326313 (+) 2031 WP_000825268.1 bacteriocin-associated integral membrane family protein -
  R4709_RS06850 - 1326315..1326956 (+) 642 WP_000565531.1 ABC transporter ATP-binding protein -
  R4709_RS06855 - 1326949..1327257 (+) 309 WP_000333257.1 hypothetical protein -
  R4709_RS06860 rsmA 1327388..1328260 (+) 873 WP_001216863.1 16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))- dimethyltransferase RsmA -

Sequence

Protein


Download         Length: 299 a.a.        Molecular weight: 35298.10 Da        Isoelectric Point: 4.8932

>NTDB_id=818702 R4709_RS06835 WP_050115346.1 1322691..1323590(+) (comR) [Streptococcus pneumoniae strain 16H3071-2]
MLIGQKIKEIRIEKGISRPDFCGDEQELTVRQLSRIESGASQPSLPKLDYIAHRLGVPVYSLMPDFSALPPAYLELKYQI
LREPIYGKEEEYDKKEACLEEIYKTYFDNLPKEEQLACEVLQACLDTSRTRRPEYAELILEEHMPQIIEKEAYSINDMLL
IRLFFYQMLIRKDLAKFINQIEKLMLFLLEQKKVTQIENYFIIRDTLISGMCCLEKVGVTDCFNDYLSCLQEIMDKTQDY
QKKPLVFMFLWKQALRVERDFSLAESFYQSSKTFAKLIGDGFLVKKLTEEWQEDVKKYL

Nucleotide


Download         Length: 900 bp        

>NTDB_id=818702 R4709_RS06835 WP_050115346.1 1322691..1323590(+) (comR) [Streptococcus pneumoniae strain 16H3071-2]
ATGTTAATTGGTCAAAAAATTAAAGAGATTCGGATAGAAAAAGGAATTAGTCGTCCAGATTTTTGTGGAGATGAGCAAGA
ACTGACAGTTCGTCAACTGTCGCGAATTGAAAGTGGAGCTTCGCAACCGAGTTTGCCCAAGTTAGACTATATTGCTCACC
GGCTAGGAGTTCCAGTTTATAGCCTTATGCCGGATTTTTCAGCTCTTCCTCCTGCTTATTTAGAATTGAAATACCAGATT
TTACGTGAACCAATCTATGGTAAAGAAGAGGAGTACGATAAGAAGGAAGCGTGTTTGGAAGAGATTTATAAAACATACTT
TGATAATCTTCCTAAAGAAGAACAATTAGCATGTGAAGTATTGCAGGCGTGTTTGGATACTTCTAGAACTAGAAGGCCTG
AATATGCAGAGTTAATACTTGAGGAACATATGCCTCAGATTATAGAAAAAGAAGCTTATTCAATAAATGATATGTTGTTG
ATTCGTTTGTTTTTTTATCAAATGCTCATTAGAAAAGATCTTGCCAAATTTATAAATCAAATCGAAAAGCTAATGCTCTT
TCTTTTGGAACAGAAGAAGGTAACTCAAATAGAGAATTACTTTATAATTAGAGATACTCTTATTTCAGGAATGTGTTGTC
TTGAAAAGGTAGGAGTAACTGATTGTTTTAATGATTATCTATCGTGTTTACAAGAAATTATGGATAAAACTCAAGATTAT
CAAAAGAAACCTCTTGTATTTATGTTTTTGTGGAAGCAAGCATTAAGAGTAGAAAGAGATTTTAGTTTAGCTGAATCATT
TTATCAGTCTTCTAAAACATTTGCGAAGCTAATTGGAGATGGATTTCTAGTAAAGAAATTGACAGAGGAATGGCAAGAGG
ATGTCAAAAAATATTTATAA

Domains

Predicted by InterProScan.

ComR tetratricopeptide (ComR_TPR)

(70-291)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comR Streptococcus suis P1/7

38.144

97.324

0.371
  comR Streptococcus suis 05ZYH33

38.144

97.324

0.371
  comR Streptococcus mutans UA159

37.415

98.328

0.368
  comR Streptococcus suis D9

36.12

100

0.361