Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssbA   Type   Machinery gene
Locus tag   PUR_RS25745 Genome accession   NZ_AP023239
Coordinates   5563939..5564436 (-) Length   165 a.a.
NCBI ID   WP_179037668.1    Uniprot ID   A0A810E7P8
Organism   Paenibacillus sp. URB8-2     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 5558939..5569436
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PUR_RS25730 (PUR_51080) opp4A 5559127..5560863 (-) 1737 WP_179037666.1 oligopeptide ABC transporter substrate-binding protein -
  PUR_RS25735 (PUR_51090) - 5561044..5562984 (-) 1941 WP_179037667.1 DNA mismatch repair protein MutS -
  PUR_RS25740 (PUR_51100) rpsR 5563645..5563917 (-) 273 WP_124697492.1 30S ribosomal protein S18 -
  PUR_RS25745 (PUR_51110) ssbA 5563939..5564436 (-) 498 WP_179037668.1 single-stranded DNA-binding protein Machinery gene
  PUR_RS25750 (PUR_51120) rpsF 5564487..5564771 (-) 285 WP_036598021.1 30S ribosomal protein S6 -
  PUR_RS25755 (PUR_51130) - 5564992..5565189 (+) 198 WP_124697494.1 YjzC family protein -
  PUR_RS25765 (PUR_51140) - 5565808..5566488 (-) 681 WP_179037669.1 ABC transporter permease -
  PUR_RS25770 (PUR_51150) - 5566481..5567401 (-) 921 WP_179037670.1 ABC transporter ATP-binding protein -
  PUR_RS25775 (PUR_51160) - 5567550..5568485 (-) 936 WP_179037671.1 sensor histidine kinase -
  PUR_RS25780 (PUR_51170) - 5568482..5569201 (-) 720 WP_269474689.1 response regulator transcription factor -

Sequence

Protein


Download         Length: 165 a.a.        Molecular weight: 18027.84 Da        Isoelectric Point: 4.8192

>NTDB_id=81845 PUR_RS25745 WP_179037668.1 5563939..5564436(-) (ssbA) [Paenibacillus sp. URB8-2]
MLNRVILIGRLTRDPELRYTPAGVAVTQFTLAVDRPFTSQGGEREADFIPVVTWRQLAETCANYLRKGRLTAVEGRIQVR
NYENNEGKRVYVTEVIADNVRFLESSQSREGGNASGGGDMPEPPSYGGGGRGNSGNSGFSRNNNNQDPFSGDGKPIDISD
DDLPF

Nucleotide


Download         Length: 498 bp        

>NTDB_id=81845 PUR_RS25745 WP_179037668.1 5563939..5564436(-) (ssbA) [Paenibacillus sp. URB8-2]
ATGTTGAACCGTGTCATACTGATCGGCCGATTGACCCGCGATCCTGAGCTGCGTTATACGCCTGCCGGCGTTGCCGTAAC
CCAGTTTACGCTTGCCGTAGACAGACCTTTTACAAGCCAAGGCGGCGAACGTGAAGCGGATTTCATTCCGGTCGTAACCT
GGAGACAGCTGGCGGAGACCTGTGCCAATTACTTGCGCAAAGGTCGGCTGACGGCGGTAGAGGGTCGTATCCAAGTTCGG
AATTACGAGAATAATGAAGGCAAGCGTGTATACGTAACCGAAGTTATTGCCGATAATGTCCGTTTCCTGGAATCTTCCCA
GAGCCGTGAGGGCGGAAACGCATCCGGCGGGGGGGATATGCCCGAGCCACCTTCATACGGCGGCGGCGGACGCGGAAACA
GCGGAAATAGCGGTTTCTCGCGCAACAACAATAATCAGGATCCCTTTTCGGGCGACGGTAAGCCGATTGATATATCGGAC
GATGATTTGCCATTTTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-103)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A810E7P8

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssbA Bacillus subtilis subsp. subtilis str. 168

56

100

0.594
  ssb Latilactobacillus sakei subsp. sakei 23K

48.876

100

0.527
  ssbB Bacillus subtilis subsp. subtilis str. 168

57.692

63.03

0.364

Multiple sequence alignment