Detailed information    

insolico Bioinformatically predicted

Overview

Name   uvrB   Type   Machinery gene
Locus tag   R3L13_RS05795 Genome accession   NZ_CP137055
Coordinates   1197208..1199229 (-) Length   673 a.a.
NCBI ID   WP_001004983.1    Uniprot ID   -
Organism   Acinetobacter baumannii strain SNUBHAB0137     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1192208..1204229
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  R3L13_RS05770 (R3L13_05785) - 1192228..1192902 (-) 675 WP_000468065.1 hypothetical protein -
  R3L13_RS05775 (R3L13_05790) - 1192914..1193648 (-) 735 WP_001183838.1 hypothetical protein -
  R3L13_RS05780 (R3L13_05795) - 1193797..1195254 (-) 1458 WP_000031229.1 glyceraldehyde-3-phosphate dehydrogenase -
  R3L13_RS05785 (R3L13_05800) rarD 1195471..1196418 (-) 948 WP_160945244.1 EamA family transporter RarD -
  R3L13_RS05790 (R3L13_05805) - 1196527..1197114 (-) 588 WP_004739583.1 lipocalin family protein -
  R3L13_RS05795 (R3L13_05810) uvrB 1197208..1199229 (-) 2022 WP_001004983.1 excinuclease ABC subunit UvrB Machinery gene
  R3L13_RS05800 (R3L13_05815) - 1199409..1200200 (+) 792 WP_000222202.1 hypothetical protein -
  R3L13_RS05810 (R3L13_05825) - 1201187..1202622 (+) 1436 Protein_1150 diguanylate cyclase domain-containing protein -
  R3L13_RS05815 (R3L13_05830) - 1202657..1202836 (-) 180 WP_000139632.1 hypothetical protein -

Sequence

Protein


Download         Length: 673 a.a.        Molecular weight: 77278.03 Da        Isoelectric Point: 5.3381

>NTDB_id=817523 R3L13_RS05795 WP_001004983.1 1197208..1199229(-) (uvrB) [Acinetobacter baumannii strain SNUBHAB0137]
MNENQPFDLVTHYQPAGDQPQAIEKLVNGIEKGFRNQLLLGVTGSGKTYTMANVIAQTQRPTIVMAHNKTLAAQLYGEFK
AFFPNNAVEYFVSYYDYYQPEAYVPSSDTFIEKDAAINDHIDQMRLSATRALLERRDAIIVASVSAIYGLGDPNAYMQML
LHVVQGDRVSRDEIIRRLVEMQYTRNELEFLRGTYRIRGEIIDIFPAESDQHAIRIELFDDEVDSIRWFDPLTGKMVRKV
PRVTIYPKSHYVTPKDNLTRAIDTIKDELQDQLKFFREHDKLLEAQRIEQRTRYDLEMMQQLGYTNGIENYSRHLSGRPA
GEAPPTLFDYVPEDALLIIDESHVTVPQIGAMYKGDRSRKENLVNYGFRLPSALDNRPMKFEEWERIVPTTIFVSATPAR
YELEKSEQVVEQVVRPTGLIDPEIEVRPVLTQVDDVLSEINIRKNLNERVLVTTLTKRMAEDLTSYLKEYGVKVAYLHSD
IDTVERVKIIHELRTGVFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAARNVKGKAILYADTITD
SMRKAIDETERRRAKQIEFNEQHGITPRSAVRQAVKEIDTGEVLSDDQIDEKVLEQAQALSADERHILSDPKLFSKHITK
LEKEMLKASKDLQFEQAARIRDEIVRLKAQMLQ

Nucleotide


Download         Length: 2022 bp        

>NTDB_id=817523 R3L13_RS05795 WP_001004983.1 1197208..1199229(-) (uvrB) [Acinetobacter baumannii strain SNUBHAB0137]
GTGAACGAAAATCAACCTTTCGATTTGGTCACTCATTACCAGCCAGCGGGTGATCAGCCACAGGCAATTGAAAAGCTGGT
GAATGGTATCGAAAAGGGTTTTCGTAATCAGTTACTGCTAGGTGTGACCGGTTCAGGTAAGACCTATACCATGGCAAATG
TGATTGCCCAAACTCAGCGCCCGACGATTGTGATGGCGCATAATAAGACCTTGGCAGCCCAGCTCTATGGTGAGTTTAAA
GCTTTCTTCCCAAACAATGCAGTTGAGTATTTCGTAAGTTATTACGACTACTATCAACCCGAGGCTTATGTTCCGTCATC
AGATACATTTATTGAAAAAGACGCGGCAATTAATGACCATATTGATCAGATGCGATTATCGGCAACGCGTGCTTTGTTAG
AACGTCGTGATGCAATTATTGTTGCTTCTGTTTCGGCCATTTATGGTTTGGGTGACCCAAATGCTTATATGCAAATGTTA
TTGCATGTGGTCCAAGGTGACCGAGTAAGTCGAGACGAAATTATTCGCCGTTTGGTTGAAATGCAATATACGCGTAATGA
GCTTGAATTCTTACGTGGTACGTATCGTATCCGTGGTGAAATTATTGATATTTTCCCGGCAGAATCAGACCAACATGCGA
TTCGTATTGAACTCTTTGATGACGAAGTAGACTCAATTCGATGGTTTGATCCGCTTACCGGTAAAATGGTCCGCAAAGTA
CCACGTGTCACGATTTACCCGAAAAGCCATTATGTGACGCCAAAAGACAACCTAACACGTGCTATCGATACCATTAAGGA
TGAATTGCAAGACCAGCTTAAGTTCTTCCGTGAACATGACAAGTTACTCGAAGCGCAGCGTATCGAGCAACGTACGCGTT
ATGATTTGGAAATGATGCAGCAGTTAGGGTACACCAATGGTATCGAAAACTACTCACGTCATTTATCGGGACGACCGGCA
GGTGAAGCACCACCGACTTTATTTGACTATGTACCTGAAGATGCCTTACTTATTATCGATGAGTCGCATGTAACGGTTCC
TCAAATTGGCGCAATGTATAAAGGTGACCGTTCGCGTAAAGAAAACTTGGTGAATTACGGTTTCCGTTTACCAAGTGCGC
TTGATAACCGTCCAATGAAATTTGAAGAGTGGGAGCGTATTGTTCCGACTACTATTTTTGTGAGTGCCACACCAGCTAGA
TATGAACTGGAAAAATCAGAACAAGTGGTTGAGCAGGTTGTTCGACCAACAGGCTTGATTGATCCTGAAATTGAAGTTCG
TCCTGTACTTACCCAAGTCGATGATGTTTTGTCTGAGATTAACATTCGTAAAAACTTAAATGAGCGTGTATTGGTAACGA
CTTTAACCAAGCGTATGGCGGAAGATTTAACTTCTTATTTAAAAGAATATGGCGTTAAGGTTGCTTATCTGCACTCGGAT
ATTGATACAGTTGAACGTGTCAAAATTATTCATGAATTACGTACAGGCGTATTTGATGTACTAGTGGGTATTAACTTGCT
GCGAGAAGGCCTAGATATGCCGGAAGTTTCTTTAGTTGCTATTTTAGATGCAGATAAAGAAGGTTTCTTACGTTCTGAGC
GTTCGCTTATTCAGACGATTGGTCGTGCTGCGCGAAATGTGAAAGGTAAAGCAATTTTATATGCTGATACAATCACTGAT
TCTATGCGAAAGGCAATTGATGAGACAGAGCGCCGACGTGCAAAACAAATCGAGTTTAATGAGCAGCATGGTATTACACC
ACGTAGTGCAGTTCGTCAGGCTGTGAAAGAAATTGATACGGGTGAAGTACTTTCTGATGATCAGATTGATGAGAAAGTAC
TAGAGCAGGCACAAGCACTTAGCGCAGATGAACGACATATTCTTTCTGACCCTAAATTGTTTAGTAAGCACATTACTAAG
CTAGAGAAAGAAATGTTAAAGGCGTCGAAGGATTTACAATTCGAGCAAGCGGCGCGTATTCGTGATGAAATTGTTCGTTT
AAAAGCGCAAATGTTGCAATAA

Domains

Predicted by InterProScan.

UvrB interaction domain (UvrB_inter)

(161-251)

UvrB/uvrC motif (UVR)

(638-670)

Type III restriction enzyme, res subunit (ResIII)

(17-89)

Helicase conserved C-terminal domain (Helicase_C)

(442-545)

Ultra-violet resistance protein B (UvrB)

(553-593)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  uvrB Streptococcus pneumoniae TIGR4

57.997

99.406

0.577
  uvrB Streptococcus pneumoniae R6

57.997

99.406

0.577
  uvrB Streptococcus pneumoniae D39

57.997

99.406

0.577