Detailed information NTG0817427

Bioinformatically predicted

Overview

• Name: comB10
• Type: Machinery gene
• Locus tag: PH204_RS06470
• Genome accession: NZ_CP122953
• Coordinates: 1369593..1370732 (-)
• Length: 379 a.a.
• NCBI ID: WP_286446972.1
• Uniprot ID: -
• Organism: Helicobacter pylori strain BS30
• Function: transformation-associated type IV transport system (predicted from homology) DNA binding and uptake

Genomic Context

Location: 1364593..1375732

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
PH204_RS06455 (PH204_06455)	-	1366000..1366932 (-)	933	WP_286446967.1	GDP-L-fucose synthase	-
PH204_RS06460 (PH204_06460)	gmd	1366925..1368070 (-)	1146	WP_140474846.1	GDP-mannose 4,6-dehydratase	-
PH204_RS06465 (PH204_06465)	-	1368111..1369523 (-)	1413	WP_286446971.1	mannose-1-phosphate guanylyltransferase/mannose-6-phosphate isomerase	-
PH204_RS06470 (PH204_06470)	comB10	1369593..1370732 (-)	1140	WP_286446972.1	DNA type IV secretion system protein ComB10	Machinery gene
PH204_RS06475 (PH204_06475)	comB9	1370725..1371687 (-)	963	WP_286446973.1	TrbG/VirB9 family P-type conjugative transfer protein	Machinery gene
PH204_RS06480 (PH204_06480)	comB8	1371687..1372430 (-)	744	WP_286446975.1	virB8 family protein	Machinery gene
PH204_RS06485 (PH204_06485)	comB7	1372427..1372540 (-)	114	WP_001217873.1	hypothetical protein	Machinery gene
PH204_RS06490 (PH204_06490)	comB6	1372556..1373611 (-)	1056	WP_286447846.1	P-type conjugative transfer protein TrbL	Machinery gene
PH204_RS06495 (PH204_06495)	-	1373619..1374614 (-)	996	WP_286446978.1	PDZ domain-containing protein	-
PH204_RS06500 (PH204_06500)	-	1374614..1374916 (-)	303	WP_181229633.1	YbaB/EbfC family nucleoid-associated protein	-
PH204_RS06505 (PH204_06505)	panD	1374919..1375272 (-)	354	WP_000142243.1	aspartate 1-decarboxylase	-

Sequence

Protein

• Length: 379 a.a.
• Molecular weight: 42128.66 Da
• Isoelectric Point: 9.9312

>NTDB_id=817427 PH204_RS06470 WP_286446972.1 1369593..1370732(-) (comB10) [Helicobacter pylori strain BS30]
MNKWLKGAIVFVGGFATITTISLVYHQKPKAPLNNQPSLLNDDEVKYPLQDYTFTQNPQPTNTESSKDATIKALQEQLKA
ALKALNSKEMNSSKEETFASPPIDLKANTTPPKKDFSLKQLDLLASRITPFKQSPKNYEENLIFPMDNPKGIDGFTNLKE
KDIATNENKLLRTITADKMIPAFLITPISSQIAGKVIAQVESDIFAHMGKAVLIPKGSKVIGYYSNNNNKMGEYRLDIVW
SRIITPHGINIMLTNAKGADIKGYNGLVGELIERNFQRYGVPLLLSTLTNGLLIGITSALNNRGNKEGATNFFGDYLLLQ
LMRQSGMGINQVVNQILRDKSKIAPIVVIREGSRVFISPNTDIFFPIPRENEVIAEFLK

Nucleotide

• Length: 1140 bp

>NTDB_id=817427 PH204_RS06470 WP_286446972.1 1369593..1370732(-) (comB10) [Helicobacter pylori strain BS30]
ATGAATAAGTGGCTTAAGGGGGCGATTGTTTTTGTAGGGGGTTTTGCAACGATTACAACCATTTCTTTAGTCTATCATCA
AAAGCCAAAAGCCCCCTTAAATAACCAGCCTAGCCTTTTGAATGACGATGAGGTGAAATACCCCTTACAAGACTACACTT
TCACTCAAAACCCACAGCCAACTAACACAGAAAGCTCCAAAGACGCTACCATCAAAGCTTTACAAGAACAGCTAAAAGCC
GCTTTAAAAGCCCTAAACTCCAAAGAAATGAACTCTTCTAAAGAAGAAACTTTTGCTAGCCCTCCCATAGATTTAAAAGC
AAACACAACCCCCCCTAAAAAAGACTTTTCTCTAAAGCAATTAGATTTACTAGCCTCTCGCATCACCCCCTTTAAACAAA
GCCCTAAAAATTACGAAGAAAACCTGATTTTTCCCATGGATAACCCTAAGGGCATTGATGGTTTTACTAACCTTAAAGAA
AAAGACATCGCTACCAATGAAAACAAGCTTTTACGCACCATTACAGCCGATAAAATGATACCCGCCTTTCTCATCACGCC
CATTTCTAGCCAGATCGCTGGTAAAGTCATCGCGCAAGTGGAGAGCGATATTTTTGCTCACATGGGCAAGGCCGTCTTAA
TCCCCAAAGGCTCTAAAGTCATAGGCTATTACAGCAACAACAACAACAAAATGGGCGAATACCGCTTGGATATTGTATGG
AGTCGCATCATCACTCCCCATGGCATCAATATCATGCTCACTAACGCTAAAGGGGCGGACATTAAAGGCTATAACGGCTT
GGTGGGGGAATTGATTGAAAGGAATTTCCAGCGCTATGGCGTGCCGTTACTGCTTTCTACTCTCACTAACGGCTTATTGA
TTGGGATCACTTCGGCTTTAAACAACAGGGGCAATAAAGAAGGAGCTACCAATTTCTTTGGGGATTATCTTTTATTGCAA
TTGATGAGACAAAGCGGCATGGGGATCAACCAAGTGGTCAATCAAATTTTAAGAGACAAGAGCAAAATCGCCCCCATTGT
GGTGATTAGAGAGGGAAGCAGGGTATTCATTTCGCCTAATACCGATATATTTTTTCCTATACCCAGAGAGAATGAAGTCA
TCGCTGAGTTTTTGAAGTGA

Domains

Predicted by InterproScan.

• Bacterial conjugation TrbI-like protein (TrbI) (173-365)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
comB10	Helicobacter pylori P1	97.098	100	0.971