Detailed information NTG0817431

Bioinformatically predicted

Overview

• Name: comB6
• Type: Machinery gene
• Locus tag: PH204_RS06490
• Genome accession: NZ_CP122953
• Coordinates: 1372556..1373611 (-)
• Length: 351 a.a.
• NCBI ID: WP_286447846.1
• Uniprot ID: -
• Organism: Helicobacter pylori strain BS30
• Function: transformation-associated type IV transport system (predicted from homology) DNA binding and uptake

Genomic Context

Location: 1367556..1378611

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
PH204_RS06465 (PH204_06465)	-	1368111..1369523 (-)	1413	WP_286446971.1	mannose-1-phosphate guanylyltransferase/mannose-6-phosphate isomerase	-
PH204_RS06470 (PH204_06470)	comB10	1369593..1370732 (-)	1140	WP_286446972.1	DNA type IV secretion system protein ComB10	Machinery gene
PH204_RS06475 (PH204_06475)	comB9	1370725..1371687 (-)	963	WP_286446973.1	TrbG/VirB9 family P-type conjugative transfer protein	Machinery gene
PH204_RS06480 (PH204_06480)	comB8	1371687..1372430 (-)	744	WP_286446975.1	virB8 family protein	Machinery gene
PH204_RS06485 (PH204_06485)	comB7	1372427..1372540 (-)	114	WP_001217873.1	hypothetical protein	Machinery gene
PH204_RS06490 (PH204_06490)	comB6	1372556..1373611 (-)	1056	WP_286447846.1	P-type conjugative transfer protein TrbL	Machinery gene
PH204_RS06495 (PH204_06495)	-	1373619..1374614 (-)	996	WP_286446978.1	PDZ domain-containing protein	-
PH204_RS06500 (PH204_06500)	-	1374614..1374916 (-)	303	WP_181229633.1	YbaB/EbfC family nucleoid-associated protein	-
PH204_RS06505 (PH204_06505)	panD	1374919..1375272 (-)	354	WP_000142243.1	aspartate 1-decarboxylase	-
PH204_RS06510 (PH204_06510)	-	1375262..1377487 (-)	2226	WP_286446982.1	ATP-dependent Clp protease ATP-binding subunit	-
PH204_RS06515 (PH204_06515)	-	1377487..1377762 (-)	276	WP_286446984.1	ATP-dependent Clp protease adaptor ClpS	-
PH204_RS06520 (PH204_06520)	-	1377785..1378198 (-)	414	WP_001023005.1	universal stress protein	-

Sequence

Protein

• Length: 351 a.a.
• Molecular weight: 39734.71 Da
• Isoelectric Point: 8.8165

>NTDB_id=817431 PH204_RS06490 WP_286447846.1 1372556..1373611(-) (comB6) [Helicobacter pylori strain BS30]
MKNDAYEIILSWFITPLTAILGRFAEFFLYTLHAQLVFNGVVALAFMLFAYRSLKEQNFFSVSTLTEALLFVGFFALFNY
ALKNPMHFYEFFQNTIFIAPNMIAQSLSQSLGNFSNHALSLDFIFNHGFYALSFISDLSHNEMSVWLFLSILQALFLSVL
FAIIILVYLEVHVWCSLGALFLAFGFFKTWRSVVVICLKKCFALGFYKPFLLLVGFLNVSVTKALIDAHMQEKQDLSLLL
VVALFLCCVFIIGVPFFINALFRVQNSLKETYKLATNLSANLSQNALNSLQYITTPPAPSSVSTSTSGSVSKEKETHSPT
FKVETTQLDVKIPNFKQKKVKKDTINTKNEI

Nucleotide

• Length: 1056 bp

>NTDB_id=817431 PH204_RS06490 WP_286447846.1 1372556..1373611(-) (comB6) [Helicobacter pylori strain BS30]
ATGAAAAATGACGCTTATGAAATTATCCTTTCTTGGTTTATCACGCCTCTCACGGCGATTTTAGGGCGTTTCGCTGAATT
TTTTCTCTACACTTTGCATGCGCAATTGGTGTTTAATGGCGTGGTCGCTTTAGCATTCATGCTCTTTGCTTACAGGAGTT
TGAAAGAACAGAATTTCTTCAGCGTTAGCACGCTAACAGAAGCGTTATTGTTTGTGGGGTTTTTTGCGCTTTTTAACTAC
GCTTTAAAAAATCCCATGCATTTCTATGAATTTTTCCAAAACACTATTTTTATTGCGCCTAACATGATCGCACAAAGCCT
CTCTCAAAGCTTGGGTAACTTTTCTAACCACGCGCTTTCTTTAGATTTTATCTTTAACCATGGTTTTTATGCCCTTAGCT
TTATCAGCGATTTGAGCCATAATGAAATGTCTGTGTGGCTTTTTTTAAGCATTTTGCAAGCGCTTTTTTTGAGCGTTCTG
TTTGCGATCATCATTTTAGTGTATTTAGAAGTGCATGTGTGGTGCTCTTTAGGGGCGCTGTTTTTAGCGTTTGGGTTTTT
TAAAACCTGGAGGAGCGTTGTGGTTATATGCCTAAAAAAATGCTTCGCTCTTGGGTTTTACAAGCCTTTTTTGTTGTTGG
TGGGGTTTTTGAATGTGTCGGTTACTAAGGCTTTAATAGACGCTCACATGCAAGAAAAACAAGACTTAAGCCTTTTATTG
GTGGTAGCGTTATTTTTGTGTTGCGTTTTTATCATAGGCGTTCCTTTTTTCATCAACGCTTTGTTTAGGGTGCAAAACAG
CCTTAAAGAAACTTACAAACTCGCCACCAATTTGAGCGCTAACCTCAGCCAAAACGCCCTTAATTCCTTACAATACATCA
CGACCCCACCCGCTCCCTCTAGCGTTTCTACTTCTACAAGCGGTAGCGTTTCTAAAGAAAAAGAAACGCATTCCCCCACA
TTTAAGGTAGAAACCACTCAATTAGATGTAAAAATCCCAAATTTCAAGCAAAAAAAGGTTAAAAAGGATACAATAAATAC
AAAAAATGAAATTTAA

Domains

Predicted by InterproScan.

• TrbL/VirB6 plasmid conjugal transfer protein (TrbL) (43-254)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
comB6	Helicobacter pylori 26695	96.296	100	0.963