Detailed information    

insolico Bioinformatically predicted

Overview

Name   comB9   Type   Machinery gene
Locus tag   QAD59_RS00745 Genome accession   NZ_CP122951
Coordinates   155763..156725 (+) Length   320 a.a.
NCBI ID   WP_286490163.1    Uniprot ID   -
Organism   Helicobacter pylori strain BS26     
Function   transformation-associated type IV transport system (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 150763..161725
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QAD59_RS00715 (QAD59_00715) panD 152184..152534 (+) 351 WP_140596026.1 aspartate 1-decarboxylase -
  QAD59_RS00720 (QAD59_00720) - 152545..152838 (+) 294 WP_000347916.1 YbaB/EbfC family nucleoid-associated protein -
  QAD59_RS00725 (QAD59_00725) - 152838..153833 (+) 996 WP_140446199.1 PDZ domain-containing protein -
  QAD59_RS00730 (QAD59_00730) comB6 153839..154894 (+) 1056 WP_286490522.1 P-type conjugative transfer protein TrbL Machinery gene
  QAD59_RS00735 (QAD59_00735) comB7 154910..155023 (+) 114 WP_073422943.1 comB7 lipoprotein Machinery gene
  QAD59_RS00740 (QAD59_00740) comB8 155020..155763 (+) 744 WP_140578636.1 virB8 family protein Machinery gene
  QAD59_RS00745 (QAD59_00745) comB9 155763..156725 (+) 963 WP_286490163.1 TrbG/VirB9 family P-type conjugative transfer protein Machinery gene
  QAD59_RS00750 (QAD59_00750) comB10 156718..157854 (+) 1137 WP_286490164.1 DNA type IV secretion system protein ComB10 Machinery gene
  QAD59_RS00755 (QAD59_00755) - 157924..159336 (+) 1413 WP_286490165.1 mannose-1-phosphate guanylyltransferase/mannose-6-phosphate isomerase -
  QAD59_RS00760 (QAD59_00760) gmd 159350..160495 (+) 1146 WP_001918970.1 GDP-mannose 4,6-dehydratase -
  QAD59_RS00765 (QAD59_00765) - 160488..161420 (+) 933 WP_286490166.1 GDP-L-fucose synthase -

Sequence

Protein


Download         Length: 320 a.a.        Molecular weight: 36873.44 Da        Isoelectric Point: 9.4631

>NTDB_id=817376 QAD59_RS00745 WP_286490163.1 155763..156725(+) (comB9) [Helicobacter pylori strain BS26]
MRKVLYALVGFLLAFSALRADDFLEEANETAPANLNHPMQDLNAIQGSFFDKNRSKMSNTLNIDYFQGQTYKIRLRYAMA
TLLFFSKPISDFVLGDKVGFDAKILESNDRILLIKPLQIGVDSNISVIDNEGKIFSFYVFSTTFTSSKHPNLQVFIEDKN
YYSNAFMKPQNKENTLEKAPTNNKPLKEEKEETKEEETITIGDNTNTMKIVKKDIQKGYRALKSSQRKWYCLGICSKKSK
LSLMPEEIFNDKQFTYFKFDKKLALSKFPVVYKVVDGYDNPVNTRIVGDYIIAEDVSAKWTLRLGKDYLCIRFIKKGKDE

Nucleotide


Download         Length: 963 bp        

>NTDB_id=817376 QAD59_RS00745 WP_286490163.1 155763..156725(+) (comB9) [Helicobacter pylori strain BS26]
ATGCGTAAGGTTTTATACGCTCTTGTGGGTTTTTTGTTGGCTTTTAGCGCTTTAAGAGCCGATGATTTTTTAGAAGAAGC
TAACGAAACAGCCCCAGCGAATTTAAACCACCCCATGCAGGATTTAAACGCTATTCAAGGGAGCTTTTTTGACAAAAACC
GCTCAAAAATGTCCAACACTTTGAACATTGATTACTTTCAAGGGCAAACCTATAAAATCCGCTTGCGTTATGCGATGGCG
ACCTTATTGTTTTTTTCAAAACCCATTAGCGATTTTGTTTTAGGGGATAAGGTGGGCTTTGATGCGAAAATTTTAGAAAG
TAACGATCGTATTTTACTCATCAAACCCTTACAAATTGGCGTGGATTCCAATATCAGCGTGATTGATAATGAGGGTAAGA
TTTTTTCTTTCTATGTATTTTCTACCACTTTCACCAGCTCCAAACACCCTAATTTACAGGTTTTCATAGAAGATAAAAAC
TATTATTCCAACGCTTTTATGAAGCCGCAAAACAAAGAAAATACCCTTGAAAAGGCTCCCACAAACAACAAACCCTTAAA
AGAAGAAAAAGAAGAAACCAAAGAAGAAGAGACTATAACGATTGGCGATAACACTAATACAATGAAAATCGTTAAAAAAG
ACATTCAAAAAGGCTATAGGGCTTTAAAAAGCTCTCAAAGGAAATGGTATTGTTTAGGGATTTGTTCTAAAAAATCCAAA
CTCTCTTTGATGCCTGAAGAAATTTTCAACGACAAGCAATTCACTTATTTCAAATTTGACAAAAAATTAGCGCTCTCTAA
ATTCCCGGTGGTTTATAAAGTCGTTGATGGCTATGATAACCCGGTGAATACTAGGATTGTAGGCGATTACATTATCGCTG
AAGATGTTTCGGCTAAATGGACTTTAAGGCTGGGTAAGGACTATTTGTGTATCCGTTTTATCAAAAAGGGTAAAGATGAA
TAA

Domains

Predicted by InterproScan.

Conjugal transfer protein (CagX)

(62-311)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comB9 Helicobacter pylori P1

92.638

100

0.944