Detailed information NTG0817373

Bioinformatically predicted

Overview

• Name: comB6
• Type: Machinery gene
• Locus tag: QAD59_RS00730
• Genome accession: NZ_CP122951
• Coordinates: 153839..154894 (+)
• Length: 351 a.a.
• NCBI ID: WP_286490522.1
• Uniprot ID: -
• Organism: Helicobacter pylori strain BS26
• Function: transformation-associated type IV transport system (predicted from homology) DNA binding and uptake

Genomic Context

Location: 148839..159894

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
QAD59_RS00700 (QAD59_00700)	-	149258..149671 (+)	414	WP_001023008.1	universal stress protein	-
QAD59_RS00705 (QAD59_00705)	-	149694..149969 (+)	276	WP_286490159.1	ATP-dependent Clp protease adaptor ClpS	-
QAD59_RS00710 (QAD59_00710)	-	149969..152194 (+)	2226	WP_286490160.1	ATP-dependent Clp protease ATP-binding subunit	-
QAD59_RS00715 (QAD59_00715)	panD	152184..152534 (+)	351	WP_140596026.1	aspartate 1-decarboxylase	-
QAD59_RS00720 (QAD59_00720)	-	152545..152838 (+)	294	WP_000347916.1	YbaB/EbfC family nucleoid-associated protein	-
QAD59_RS00725 (QAD59_00725)	-	152838..153833 (+)	996	WP_140446199.1	PDZ domain-containing protein	-
QAD59_RS00730 (QAD59_00730)	comB6	153839..154894 (+)	1056	WP_286490522.1	P-type conjugative transfer protein TrbL	Machinery gene
QAD59_RS00735 (QAD59_00735)	comB7	154910..155023 (+)	114	WP_073422943.1	comB7 lipoprotein	Machinery gene
QAD59_RS00740 (QAD59_00740)	comB8	155020..155763 (+)	744	WP_140578636.1	virB8 family protein	Machinery gene
QAD59_RS00745 (QAD59_00745)	comB9	155763..156725 (+)	963	WP_286490163.1	TrbG/VirB9 family P-type conjugative transfer protein	Machinery gene
QAD59_RS00750 (QAD59_00750)	comB10	156718..157854 (+)	1137	WP_286490164.1	DNA type IV secretion system protein ComB10	Machinery gene
QAD59_RS00755 (QAD59_00755)	-	157924..159336 (+)	1413	WP_286490165.1	mannose-1-phosphate guanylyltransferase/mannose-6-phosphate isomerase	-

Sequence

Protein

• Length: 351 a.a.
• Molecular weight: 39652.52 Da
• Isoelectric Point: 8.8165

>NTDB_id=817373 QAD59_RS00730 WP_286490522.1 153839..154894(+) (comB6) [Helicobacter pylori strain BS26]
MKNDAYEIILSWFITPLTAILGRFAEFFLYTLHAQLVFNSVVALAFMLFAYRSLKEQNLFSTSALTEALLFVGFFALFNY
ALKNPMHFYEFFQNAIFIAPNMITQSLSQSLSNFSNHALSLDFIFNHGFYALSFISDLSHNEMSVWLFLSVLQGLFLSVL
FAIIILVYLEVHVWCSLGVLFLAFGFFKTWRSVVVACLKKCFALGFYKPFLLLVGFLNVSVTKALIDAHMQEKQDLSLLL
VVALFLCCVFIIGVPFFINALFRAQNSLKETYKLATNLSANLSQNALNSLQYITTSPAPSSVSTSTSGSVSKEKETHSPT
FKVETTQLDVKIPNFKQKKVKKDTINTKNEI

Nucleotide

• Length: 1056 bp

>NTDB_id=817373 QAD59_RS00730 WP_286490522.1 153839..154894(+) (comB6) [Helicobacter pylori strain BS26]
ATGAAAAATGACGCTTATGAGATTATCCTTTCTTGGTTTATCACGCCTCTCACGGCGATTTTAGGGCGTTTCGCTGAATT
TTTTCTCTACACTTTGCATGCGCAATTGGTGTTTAATAGCGTGGTCGCTTTGGCGTTCATGCTCTTTGCTTATAGGAGTT
TGAAAGAACAGAATCTCTTCAGCACTAGCGCGCTAACAGAAGCGTTATTGTTTGTGGGGTTTTTTGCACTTTTTAACTAC
GCTTTAAAAAATCCCATGCATTTTTATGAATTTTTCCAAAACGCTATTTTTATTGCGCCTAACATGATCACACAAAGCCT
CTCTCAAAGCTTGAGCAACTTTTCTAACCACGCACTTTCTTTAGATTTTATCTTCAATCATGGTTTTTATGCCCTTAGTT
TTATCAGCGATTTGAGCCATAATGAAATGTCTGTGTGGCTTTTTTTAAGCGTTTTGCAAGGGCTTTTTTTGAGCGTGCTG
TTTGCGATCATTATTTTAGTGTATTTAGAAGTGCATGTGTGGTGCTCTTTAGGGGTGCTGTTTTTAGCGTTTGGGTTCTT
TAAAACCTGGAGGAGCGTTGTGGTGGCGTGCCTAAAAAAATGCTTCGCTCTTGGGTTTTACAAGCCTTTTTTGTTGTTGG
TGGGGTTTTTGAATGTGTCGGTTACTAAGGCTTTAATAGACGCTCATATGCAAGAAAAACAAGATTTAAGCCTTTTGTTG
GTGGTAGCGTTATTTTTGTGTTGCGTTTTTATCATAGGCGTGCCTTTTTTCATTAACGCTTTGTTTAGGGCGCAAAACAG
CCTTAAAGAAACTTACAAACTCGCCACCAATTTGAGCGCCAACCTCAGCCAAAACGCCCTTAATTCCTTACAATATATCA
CGACCTCGCCCGCTCCCTCTAGCGTTTCTACTTCTACAAGCGGTAGCGTTTCTAAAGAAAAAGAAACGCATTCCCCCACA
TTCAAGGTAGAAACCACCCAATTAGATGTAAAAATCCCAAATTTCAAGCAAAAAAAGGTTAAAAAGGATACAATAAATAC
AAAAAATGAAATTTAA

Domains

Predicted by InterproScan.

• TrbL/VirB6 plasmid conjugal transfer protein (TrbL) (44-254)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
comB6	Helicobacter pylori 26695	96.866	100	0.969