Detailed information
Bioinformatically predicted
Overview
| Name | comB10 | Type | Machinery gene |
| Locus tag | QAD59_RS00750 | Genome accession | NZ_CP122951 |
| Coordinates | 156718..157854 (+) | Length | 378 a.a. |
| NCBI ID | WP_286490164.1 | Uniprot ID | - |
| Organism | Helicobacter pylori strain BS26 | ||
| Function | transformation-associated type IV transport system (predicted from homology) DNA binding and uptake |
||
Genomic Context
Location: 151718..162854
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| QAD59_RS00715 (QAD59_00715) | panD | 152184..152534 (+) | 351 | WP_140596026.1 | aspartate 1-decarboxylase | - |
| QAD59_RS00720 (QAD59_00720) | - | 152545..152838 (+) | 294 | WP_000347916.1 | YbaB/EbfC family nucleoid-associated protein | - |
| QAD59_RS00725 (QAD59_00725) | - | 152838..153833 (+) | 996 | WP_140446199.1 | PDZ domain-containing protein | - |
| QAD59_RS00730 (QAD59_00730) | comB6 | 153839..154894 (+) | 1056 | WP_286490522.1 | P-type conjugative transfer protein TrbL | Machinery gene |
| QAD59_RS00735 (QAD59_00735) | comB7 | 154910..155023 (+) | 114 | WP_073422943.1 | comB7 lipoprotein | Machinery gene |
| QAD59_RS00740 (QAD59_00740) | comB8 | 155020..155763 (+) | 744 | WP_140578636.1 | virB8 family protein | Machinery gene |
| QAD59_RS00745 (QAD59_00745) | comB9 | 155763..156725 (+) | 963 | WP_286490163.1 | TrbG/VirB9 family P-type conjugative transfer protein | Machinery gene |
| QAD59_RS00750 (QAD59_00750) | comB10 | 156718..157854 (+) | 1137 | WP_286490164.1 | DNA type IV secretion system protein ComB10 | Machinery gene |
| QAD59_RS00755 (QAD59_00755) | - | 157924..159336 (+) | 1413 | WP_286490165.1 | mannose-1-phosphate guanylyltransferase/mannose-6-phosphate isomerase | - |
| QAD59_RS00760 (QAD59_00760) | gmd | 159350..160495 (+) | 1146 | WP_001918970.1 | GDP-mannose 4,6-dehydratase | - |
| QAD59_RS00765 (QAD59_00765) | - | 160488..161420 (+) | 933 | WP_286490166.1 | GDP-L-fucose synthase | - |
| QAD59_RS00770 (QAD59_00770) | hypE | 161668..162666 (-) | 999 | WP_286490168.1 | hydrogenase expression/formation protein HypE | - |
Sequence
Protein
Download Length: 378 a.a. Molecular weight: 42132.77 Da Isoelectric Point: 9.9750
>NTDB_id=817377 QAD59_RS00750 WP_286490164.1 156718..157854(+) (comB10) [Helicobacter pylori strain BS26]
MNKWLKGALVFVGGFATITTISLIYHQKPKAPLNNQPNLLNDDEVKYPLQDYTFTQKPQPTPTESSKDATIKALQEQLKA
ALKALNSKEMNSSKEETFKSPLIDSKTNTTPPKKDFSLKQLDLLAARITPFKQSPKNYEENLIFPMDNPKGIDGFTNLKE
KDTATNENKLLRTITADKMIPAFLITPISSQIAGKVIAQVESDIFAHMGKAVLIPKGSKVIGYYSNNNKMGEYRLDIVWS
RIITPHGINIMLTNAKGADIKGYNGLVGELIERNFQRYGVPLLLSTLTNSLLIGITSALNNRGNKEGVTNFFGDYLLLQL
MRQSGMGINQVVNQILRDKSKIAPIVVIREGSRVFISPNTDIFFPIPKEDEVIAEFLK
MNKWLKGALVFVGGFATITTISLIYHQKPKAPLNNQPNLLNDDEVKYPLQDYTFTQKPQPTPTESSKDATIKALQEQLKA
ALKALNSKEMNSSKEETFKSPLIDSKTNTTPPKKDFSLKQLDLLAARITPFKQSPKNYEENLIFPMDNPKGIDGFTNLKE
KDTATNENKLLRTITADKMIPAFLITPISSQIAGKVIAQVESDIFAHMGKAVLIPKGSKVIGYYSNNNKMGEYRLDIVWS
RIITPHGINIMLTNAKGADIKGYNGLVGELIERNFQRYGVPLLLSTLTNSLLIGITSALNNRGNKEGVTNFFGDYLLLQL
MRQSGMGINQVVNQILRDKSKIAPIVVIREGSRVFISPNTDIFFPIPKEDEVIAEFLK
Nucleotide
Download Length: 1137 bp
>NTDB_id=817377 QAD59_RS00750 WP_286490164.1 156718..157854(+) (comB10) [Helicobacter pylori strain BS26]
ATGAATAAGTGGCTTAAGGGGGCACTTGTTTTTGTAGGGGGTTTTGCAACGATTACAACAATTTCTTTAATCTATCATCA
AAAGCCAAAAGCCCCCCTAAATAACCAACCCAACCTTTTGAATGACGATGAGGTGAAATACCCCTTACAAGACTACACCT
TCACTCAAAAACCACAGCCAACTCCCACAGAAAGCTCCAAAGACGCTACCATTAAAGCCTTACAAGAACAGCTAAAAGCC
GCTTTAAAAGCCCTAAACTCCAAAGAAATGAACTCTTCTAAAGAAGAAACTTTTAAGAGCCCTCTCATAGATTCAAAAAC
AAACACAACCCCCCCTAAAAAAGACTTTTCTCTAAAGCAATTAGATTTACTAGCCGCTCGCATCACCCCTTTCAAACAAA
GCCCTAAAAATTACGAAGAAAACCTGATTTTCCCCATGGATAATCCTAAAGGGATCGATGGTTTTACTAACCTTAAAGAA
AAAGACACCGCCACCAATGAAAACAAGCTTTTACGCACCATTACAGCCGATAAAATGATACCCGCCTTTTTGATCACGCC
TATTTCTAGCCAGATTGCCGGTAAAGTCATCGCACAAGTGGAAAGCGATATTTTTGCTCACATGGGCAAGGCCGTCTTAA
TCCCCAAAGGCTCTAAAGTCATAGGCTATTACAGCAACAACAACAAAATGGGCGAATACCGCTTGGATATTGTATGGAGC
CGCATCATCACTCCCCATGGCATCAATATCATGCTCACTAACGCTAAAGGGGCGGACATTAAAGGCTATAACGGCTTAGT
GGGGGAATTGATTGAAAGGAATTTCCAGCGCTATGGCGTTCCGTTACTGCTTTCTACTCTCACTAACAGCTTATTGATTG
GGATCACTTCGGCTTTAAACAACAGGGGCAATAAAGAAGGAGTCACCAATTTCTTTGGGGATTATCTTTTATTGCAATTG
ATGAGGCAAAGCGGCATGGGGATCAATCAAGTGGTCAATCAAATTTTAAGAGACAAGAGCAAAATCGCTCCTATTGTGGT
GATTAGAGAGGGAAGTAGGGTCTTCATTTCGCCCAATACTGACATCTTCTTTCCTATACCCAAAGAGGATGAAGTTATCG
CTGAGTTTTTGAAGTGA
ATGAATAAGTGGCTTAAGGGGGCACTTGTTTTTGTAGGGGGTTTTGCAACGATTACAACAATTTCTTTAATCTATCATCA
AAAGCCAAAAGCCCCCCTAAATAACCAACCCAACCTTTTGAATGACGATGAGGTGAAATACCCCTTACAAGACTACACCT
TCACTCAAAAACCACAGCCAACTCCCACAGAAAGCTCCAAAGACGCTACCATTAAAGCCTTACAAGAACAGCTAAAAGCC
GCTTTAAAAGCCCTAAACTCCAAAGAAATGAACTCTTCTAAAGAAGAAACTTTTAAGAGCCCTCTCATAGATTCAAAAAC
AAACACAACCCCCCCTAAAAAAGACTTTTCTCTAAAGCAATTAGATTTACTAGCCGCTCGCATCACCCCTTTCAAACAAA
GCCCTAAAAATTACGAAGAAAACCTGATTTTCCCCATGGATAATCCTAAAGGGATCGATGGTTTTACTAACCTTAAAGAA
AAAGACACCGCCACCAATGAAAACAAGCTTTTACGCACCATTACAGCCGATAAAATGATACCCGCCTTTTTGATCACGCC
TATTTCTAGCCAGATTGCCGGTAAAGTCATCGCACAAGTGGAAAGCGATATTTTTGCTCACATGGGCAAGGCCGTCTTAA
TCCCCAAAGGCTCTAAAGTCATAGGCTATTACAGCAACAACAACAAAATGGGCGAATACCGCTTGGATATTGTATGGAGC
CGCATCATCACTCCCCATGGCATCAATATCATGCTCACTAACGCTAAAGGGGCGGACATTAAAGGCTATAACGGCTTAGT
GGGGGAATTGATTGAAAGGAATTTCCAGCGCTATGGCGTTCCGTTACTGCTTTCTACTCTCACTAACAGCTTATTGATTG
GGATCACTTCGGCTTTAAACAACAGGGGCAATAAAGAAGGAGTCACCAATTTCTTTGGGGATTATCTTTTATTGCAATTG
ATGAGGCAAAGCGGCATGGGGATCAATCAAGTGGTCAATCAAATTTTAAGAGACAAGAGCAAAATCGCTCCTATTGTGGT
GATTAGAGAGGGAAGTAGGGTCTTCATTTCGCCCAATACTGACATCTTCTTTCCTATACCCAAAGAGGATGAAGTTATCG
CTGAGTTTTTGAAGTGA
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| comB10 | Helicobacter pylori P1 |
94.974 |
100 |
0.95 |