Detailed information NTG0817292

Bioinformatically predicted

Overview

• Name: comB10
• Type: Machinery gene
• Locus tag: QAD57_RS04330
• Genome accession: NZ_CP122947
• Coordinates: 923714..924850 (-)
• Length: 378 a.a.
• NCBI ID: WP_286445306.1
• Uniprot ID: -
• Organism: Helicobacter pylori strain BS07
• Function: transformation-associated type IV transport system (predicted from homology) DNA binding and uptake

Genomic Context

Location: 918714..929850

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
QAD57_RS04310 (QAD57_04305)	hypE	918890..919888 (+)	999	WP_286445303.1	hydrogenase expression/formation protein HypE	-
QAD57_RS04315 (QAD57_04310)	-	920148..921080 (-)	933	WP_050851705.1	GDP-L-fucose synthase	-
QAD57_RS04320 (QAD57_04315)	gmd	921073..922218 (-)	1146	WP_286445304.1	GDP-mannose 4,6-dehydratase	-
QAD57_RS04325 (QAD57_04320)	-	922232..923644 (-)	1413	WP_286445305.1	mannose-1-phosphate guanylyltransferase/mannose-6-phosphate isomerase	-
QAD57_RS04330 (QAD57_04325)	comB10	923714..924850 (-)	1137	WP_286445306.1	DNA type IV secretion system protein ComB10	Machinery gene
QAD57_RS04335 (QAD57_04330)	comB9	924843..925805 (-)	963	WP_286445307.1	TrbG/VirB9 family P-type conjugative transfer protein	Machinery gene
QAD57_RS04340 (QAD57_04335)	comB8	925805..926542 (-)	738	WP_075708163.1	virB8 family protein	Machinery gene
QAD57_RS04345 (QAD57_04340)	comB7	926539..926664 (-)	126	WP_001217867.1	hypothetical protein	Machinery gene
QAD57_RS04350 (QAD57_04345)	comB6	926680..927735 (-)	1056	WP_286445309.1	P-type conjugative transfer protein TrbL	Machinery gene
QAD57_RS04355 (QAD57_04350)	-	927741..928736 (-)	996	WP_286446347.1	PDZ domain-containing protein	-
QAD57_RS04360 (QAD57_04355)	-	928736..929029 (-)	294	WP_000347917.1	YbaB/EbfC family nucleoid-associated protein	-
QAD57_RS04365 (QAD57_04360)	panD	929040..929390 (-)	351	WP_180454389.1	aspartate 1-decarboxylase	-

Sequence

Protein

• Length: 378 a.a.
• Molecular weight: 42077.69 Da
• Isoelectric Point: 9.9227

>NTDB_id=817292 QAD57_RS04330 WP_286445306.1 923714..924850(-) (comB10) [Helicobacter pylori strain BS07]
MNKWLKGVLVFVGGFATIVTISLIYHQKPKAPLNNQPNLLNDDEVKYPLQDYTFTQNPQPTNTESSKDATIKALQEQLKA
ALKALNSKEMNSSKEETFTSPPIDLKTNTTPPKKDFSLKQLDLLASRITPFKQSPKNYEENLIFPMDNPKGIDGFTNLKE
KDIATNENKLLRTITADKMIPAFLITPISSQIAGKVIAQVESDIFASMGKAVLIPKGSKVIGYYSNNNKMGEYRLDIVWS
RIITPHGINIMLTNAKGADIKGYNGLVGELIERNFQRYGVPLLLSTLTNGLLIGITSALNNRGNKEGVTNFFGDYLLLQL
MRQSGMGINQVVNQILRDKSKIAPIVVVREGSRVFISPNTDIFFPIPKENEVIAEFLK

Nucleotide

• Length: 1137 bp

>NTDB_id=817292 QAD57_RS04330 WP_286445306.1 923714..924850(-) (comB10) [Helicobacter pylori strain BS07]
ATGAATAAGTGGCTTAAGGGGGTGCTTGTTTTTGTAGGGGGTTTTGCAACGATTGTAACAATTTCTTTAATCTATCATCA
AAAGCCAAAAGCCCCCCTAAATAACCAACCCAACCTTTTGAATGACGATGAGGTGAAATACCCCTTACAAGACTACACCT
TCACTCAAAACCCACAGCCAACTAATACAGAAAGCTCCAAAGACGCTACCATCAAAGCCTTACAAGAACAGCTAAAAGCC
GCTTTAAAAGCCCTAAACTCCAAAGAAATGAACTCTTCTAAAGAAGAAACTTTTACTAGCCCTCCCATAGATTTAAAAAC
AAACACAACCCCCCCTAAAAAAGACTTTTCTCTAAAGCAATTAGATTTACTAGCCTCCCGCATCACCCCTTTCAAACAAA
GCCCTAAAAATTACGAAGAAAACCTGATTTTCCCCATGGATAACCCTAAAGGGATCGATGGTTTTACTAACCTTAAAGAA
AAAGACATCGCTACCAATGAAAACAAGCTTTTACGCACCATTACAGCCGATAAAATGATACCCGCCTTTTTGATCACGCC
TATTTCTAGTCAGATCGCTGGTAAAGTCATCGCGCAAGTGGAGAGCGATATTTTTGCGAGCATGGGCAAGGCCGTCTTAA
TCCCCAAAGGCTCTAAAGTCATAGGCTATTACAGCAATAATAACAAAATGGGCGAATACCGCTTGGATATTGTATGGAGC
CGCATCATCACCCCCCATGGCATCAATATCATGCTCACTAACGCTAAAGGGGCGGACATTAAAGGCTATAACGGCTTGGT
GGGGGAATTGATTGAAAGGAATTTCCAACGCTATGGTGTGCCGTTACTGCTTTCTACTCTCACTAACGGCTTATTGATTG
GGATCACTTCGGCTTTAAACAACAGGGGCAATAAAGAAGGAGTCACCAATTTCTTTGGGGATTACCTTTTATTGCAATTG
ATGAGACAAAGCGGCATGGGGATCAATCAAGTGGTCAATCAAATTTTAAGAGACAAGAGCAAAATCGCTCCTATTGTGGT
GGTTAGAGAGGGAAGTAGGGTCTTCATTTCGCCCAATACTGACATCTTCTTTCCTATACCCAAAGAGAATGAAGTTATCG
CTGAGTTTTTGAAGTGA

Domains

Predicted by InterproScan.

• Bacterial conjugation TrbI-like protein (TrbI) (173-364)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
comB10	Helicobacter pylori P1	95.503	100	0.955