Detailed information NTG0817296

Bioinformatically predicted

Overview

• Name: comB6
• Type: Machinery gene
• Locus tag: QAD57_RS04350
• Genome accession: NZ_CP122947
• Coordinates: 926680..927735 (-)
• Length: 351 a.a.
• NCBI ID: WP_286445309.1
• Uniprot ID: -
• Organism: Helicobacter pylori strain BS07
• Function: transformation-associated type IV transport system (predicted from homology) DNA binding and uptake

Genomic Context

Location: 921680..932735

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
QAD57_RS04325 (QAD57_04320)	-	922232..923644 (-)	1413	WP_286445305.1	mannose-1-phosphate guanylyltransferase/mannose-6-phosphate isomerase	-
QAD57_RS04330 (QAD57_04325)	comB10	923714..924850 (-)	1137	WP_286445306.1	DNA type IV secretion system protein ComB10	Machinery gene
QAD57_RS04335 (QAD57_04330)	comB9	924843..925805 (-)	963	WP_286445307.1	TrbG/VirB9 family P-type conjugative transfer protein	Machinery gene
QAD57_RS04340 (QAD57_04335)	comB8	925805..926542 (-)	738	WP_075708163.1	virB8 family protein	Machinery gene
QAD57_RS04345 (QAD57_04340)	comB7	926539..926664 (-)	126	WP_001217867.1	hypothetical protein	Machinery gene
QAD57_RS04350 (QAD57_04345)	comB6	926680..927735 (-)	1056	WP_286445309.1	P-type conjugative transfer protein TrbL	Machinery gene
QAD57_RS04355 (QAD57_04350)	-	927741..928736 (-)	996	WP_286446347.1	PDZ domain-containing protein	-
QAD57_RS04360 (QAD57_04355)	-	928736..929029 (-)	294	WP_000347917.1	YbaB/EbfC family nucleoid-associated protein	-
QAD57_RS04365 (QAD57_04360)	panD	929040..929390 (-)	351	WP_180454389.1	aspartate 1-decarboxylase	-
QAD57_RS04370 (QAD57_04365)	-	929380..931605 (-)	2226	WP_286445310.1	ATP-dependent Clp protease ATP-binding subunit	-
QAD57_RS04375 (QAD57_04370)	-	931605..931874 (-)	270	WP_220934289.1	ATP-dependent Clp protease adaptor ClpS	-
QAD57_RS04380 (QAD57_04375)	-	931918..932331 (-)	414	WP_001023008.1	universal stress protein	-

Sequence

Protein

• Length: 351 a.a.
• Molecular weight: 39912.88 Da
• Isoelectric Point: 8.8165

>NTDB_id=817296 QAD57_RS04350 WP_286445309.1 926680..927735(-) (comB6) [Helicobacter pylori strain BS07]
MKNDAYEIILSWFITPLTAILGRFAEFFLYTLHAQLVFNSVVALAFMLFAYRSLKEQNFFSASVLTEALLFVGFFALFNY
ALKNPMHFYEFFQNAIFIAPNMITQSLSQSLSNFSNHALSLDFIFNHGFYALSFISDLNHNEMSVWLFLSILQGLFLSVL
FAIIILVYLEVHVWCSLGVLFLAFGFFKTWRSVVVACLKKCFALGFYKPFLLLVGFLNVSVTKALIDAHMQEKQDLSLLL
VVALFLCCVFIIGVPFFINALFRVQNSLKETYKLATNLSANLSQNALNSLQYITTPPASSSVSSSMRESTSKEKETHSPT
FKVETTQLDVKIPNFKQKKVKKDTINTKNEI

Nucleotide

• Length: 1056 bp

>NTDB_id=817296 QAD57_RS04350 WP_286445309.1 926680..927735(-) (comB6) [Helicobacter pylori strain BS07]
ATGAAAAATGACGCTTATGAGATTATCCTTTCTTGGTTTATCACGCCTCTCACGGCGATTTTAGGGCGTTTCGCTGAATT
TTTTCTCTACACTTTGCATGCGCAATTGGTGTTTAATAGCGTGGTCGCTTTGGCGTTCATGCTCTTTGCTTATAGGAGTT
TGAAAGAACAGAATTTCTTCAGCGCTAGCGTGCTAACAGAAGCGTTATTGTTTGTGGGGTTTTTTGCACTTTTTAACTAC
GCTTTAAAAAATCCCATGCATTTTTATGAATTTTTCCAAAACGCTATTTTTATTGCGCCTAACATGATCACACAAAGCCT
CTCTCAAAGCTTGAGTAACTTTTCTAACCATGCGCTTTCTTTAGATTTTATCTTTAATCATGGTTTTTATGCCCTTAGTT
TTATCAGCGATTTGAACCATAATGAAATGTCTGTGTGGCTTTTTTTAAGCATTTTGCAAGGGCTTTTTTTGAGCGTGCTG
TTTGCGATTATTATTTTAGTGTATTTAGAAGTGCATGTGTGGTGCTCTTTAGGGGTGCTGTTTTTAGCGTTTGGGTTTTT
TAAAACCTGGAGGAGCGTTGTGGTGGCGTGCCTAAAAAAATGCTTCGCTCTTGGGTTTTACAAGCCTTTTTTGTTGTTGG
TGGGGTTTTTGAATGTGTCGGTTACTAAGGCTTTAATAGACGCTCATATGCAAGAAAAACAAGACTTAAGCCTTTTATTG
GTGGTAGCGTTATTTTTGTGTTGCGTTTTTATCATAGGCGTGCCTTTTTTCATCAACGCTTTGTTTAGGGTGCAAAACAG
CCTTAAAGAAACTTACAAACTCGCCACCAATTTGAGTGCTAATCTCAGCCAAAACGCCCTTAATTCCTTACAATATATCA
CGACCCCACCCGCTTCTTCTAGCGTTTCTTCTTCTATGAGAGAAAGCACCTCTAAAGAAAAAGAAACGCATTCCCCCACA
TTCAAGGTAGAAACCACTCAATTAGATGTAAAAATCCCAAATTTCAAGCAAAAAAAGGTTAAAAAGGATACAATAAATAC
AAAAAATGAAATTTAA

Domains

Predicted by InterproScan.

• TrbL/VirB6 plasmid conjugal transfer protein (TrbL) (44-254)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
comB6	Helicobacter pylori 26695	97.721	100	0.977