Detailed information NTG0817271

Bioinformatically predicted

Overview

• Name: comB9
• Type: Machinery gene
• Locus tag: QAP07_RS00955
• Genome accession: NZ_CP122946
• Coordinates: 200243..201226 (+)
• Length: 327 a.a.
• NCBI ID: WP_286444684.1
• Uniprot ID: -
• Organism: Helicobacter pylori strain BS31
• Function: transformation-associated type IV transport system (predicted from homology) DNA binding and uptake

Genomic Context

Location: 195243..206226

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
QAP07_RS00925 (QAP07_00925)	panD	196667..197020 (+)	354	WP_286444682.1	aspartate 1-decarboxylase	-
QAP07_RS00930 (QAP07_00930)	-	197023..197316 (+)	294	WP_000347917.1	YbaB/EbfC family nucleoid-associated protein	-
QAP07_RS00935 (QAP07_00935)	-	197316..198311 (+)	996	WP_286445124.1	PDZ domain-containing protein	-
QAP07_RS00940 (QAP07_00940)	comB6	198319..199374 (+)	1056	WP_286445125.1	P-type conjugative transfer protein TrbL	Machinery gene
QAP07_RS00945 (QAP07_00945)	comB7	199390..199503 (+)	114	WP_001217877.1	hypothetical protein	Machinery gene
QAP07_RS00950 (QAP07_00950)	comB8	199500..200243 (+)	744	WP_286444683.1	virB8 family protein	Machinery gene
QAP07_RS00955 (QAP07_00955)	comB9	200243..201226 (+)	984	WP_286444684.1	TrbG/VirB9 family P-type conjugative transfer protein	Machinery gene
QAP07_RS00960 (QAP07_00960)	comB10	201219..202355 (+)	1137	WP_286444685.1	DNA type IV secretion system protein ComB10	Machinery gene
QAP07_RS00965 (QAP07_00965)	-	202425..203837 (+)	1413	WP_286444687.1	mannose-1-phosphate guanylyltransferase/mannose-6-phosphate isomerase	-
QAP07_RS00970 (QAP07_00970)	gmd	203878..205023 (+)	1146	WP_286444688.1	GDP-mannose 4,6-dehydratase	-
QAP07_RS00975 (QAP07_00975)	-	205016..205948 (+)	933	WP_286444690.1	GDP-L-fucose synthase	-

Sequence

Protein

• Length: 327 a.a.
• Molecular weight: 37760.41 Da
• Isoelectric Point: 9.2032

>NTDB_id=817271 QAP07_RS00955 WP_286444684.1 200243..201226(+) (comB9) [Helicobacter pylori strain BS31]
MRKVLYALMGFLLAFSALRADDFLEEANETAPTNLNHPMQDLNAIQGSFFDKNRSKMSNTLNIDYFQGQTYKIRLRYAMA
TLLFFSKPISDFVLGDKVGFDAKILESNDRILLIKPLQIGVDSNISVIDSEGKIFSFYVFSTTFTSSKHPNLQVFIEDKN
YYSNAFMKPQNEENTLENAPTNNKPLKEEPLKEEKEETKEKEEETITIGDNTNAMKIVKKDIQKGYKALKSSQRKWYCLG
ICSKKSKLSLMPKEIFNDKQFTYFKFDKRLALSKFPVIYKVVDGYDNPVNTRIVGDYIIAEDVSAKWTLRLGKDYLCIRF
VKKARDE

Nucleotide

• Length: 984 bp

>NTDB_id=817271 QAP07_RS00955 WP_286444684.1 200243..201226(+) (comB9) [Helicobacter pylori strain BS31]
ATGCGTAAGGTTTTATACGCTCTCATGGGCTTTTTGTTGGCTTTTAGCGCTTTAAGAGCCGATGATTTTTTAGAAGAAGC
TAACGAAACAGCCCCAACGAATTTAAACCACCCCATGCAGGATTTAAACGCCATTCAAGGGAGCTTTTTTGATAAAAACC
GCTCCAAAATGTCCAACACTTTGAACATTGATTATTTTCAAGGGCAAACTTATAAAATCCGCTTGCGTTATGCGATGGCG
ACCTTATTGTTTTTTTCAAAACCCATTAGCGATTTTGTTTTAGGGGATAAGGTGGGCTTTGACGCGAAAATCTTAGAAAG
TAACGATCGCATTTTGCTCATCAAACCCCTACAAATTGGCGTGGATTCTAATATCAGCGTGATAGATAGTGAGGGCAAGA
TTTTTTCTTTCTATGTGTTTTCTACCACTTTCACCAGCTCCAAACACCCTAATTTACAGGTTTTCATAGAAGATAAAAAC
TATTATTCCAACGCTTTTATGAAGCCGCAAAATGAAGAAAATACCCTTGAAAATGCCCCCACAAACAACAAGCCCTTAAA
AGAAGAACCCTTAAAAGAAGAAAAAGAAGAAACCAAAGAAAAAGAAGAAGAGACTATAACTATTGGCGATAACACCAATG
CGATGAAAATCGTTAAAAAAGACATTCAAAAAGGCTATAAGGCTTTAAAAAGCTCTCAAAGGAAATGGTATTGTTTAGGG
ATTTGTTCTAAAAAATCCAAGCTCTCTTTGATGCCTAAAGAAATCTTTAACGACAAGCAATTCACTTATTTCAAATTTGA
CAAAAGATTAGCGCTCTCTAAATTCCCGGTGATTTATAAGGTCGTTGATGGCTATGATAACCCGGTGAATACAAGGATTG
TGGGCGATTACATTATAGCTGAAGACGTCTCGGCTAAATGGACTTTAAGGCTGGGCAAGGACTATTTGTGCATCCGTTTT
GTCAAAAAGGCTAGAGATGAATAA

Domains

Predicted by InterproScan.

• Conjugal transfer protein (CagX) (62-318)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
comB9	Helicobacter pylori P1	94.562	100	0.957