Detailed information NTG0817268

Bioinformatically predicted

Overview

• Name: comB6
• Type: Machinery gene
• Locus tag: QAP07_RS00940
• Genome accession: NZ_CP122946
• Coordinates: 198319..199374 (+)
• Length: 351 a.a.
• NCBI ID: WP_286445125.1
• Uniprot ID: -
• Organism: Helicobacter pylori strain BS31
• Function: transformation-associated type IV transport system (predicted from homology) DNA binding and uptake

Genomic Context

Location: 193319..204374

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
QAP07_RS00910 (QAP07_00910)	-	193741..194154 (+)	414	WP_001023008.1	universal stress protein	-
QAP07_RS00915 (QAP07_00915)	-	194177..194452 (+)	276	WP_286444680.1	ATP-dependent Clp protease adaptor ClpS	-
QAP07_RS00920 (QAP07_00920)	-	194452..196677 (+)	2226	WP_286444681.1	ATP-dependent Clp protease ATP-binding subunit	-
QAP07_RS00925 (QAP07_00925)	panD	196667..197020 (+)	354	WP_286444682.1	aspartate 1-decarboxylase	-
QAP07_RS00930 (QAP07_00930)	-	197023..197316 (+)	294	WP_000347917.1	YbaB/EbfC family nucleoid-associated protein	-
QAP07_RS00935 (QAP07_00935)	-	197316..198311 (+)	996	WP_286445124.1	PDZ domain-containing protein	-
QAP07_RS00940 (QAP07_00940)	comB6	198319..199374 (+)	1056	WP_286445125.1	P-type conjugative transfer protein TrbL	Machinery gene
QAP07_RS00945 (QAP07_00945)	comB7	199390..199503 (+)	114	WP_001217877.1	hypothetical protein	Machinery gene
QAP07_RS00950 (QAP07_00950)	comB8	199500..200243 (+)	744	WP_286444683.1	virB8 family protein	Machinery gene
QAP07_RS00955 (QAP07_00955)	comB9	200243..201226 (+)	984	WP_286444684.1	TrbG/VirB9 family P-type conjugative transfer protein	Machinery gene
QAP07_RS00960 (QAP07_00960)	comB10	201219..202355 (+)	1137	WP_286444685.1	DNA type IV secretion system protein ComB10	Machinery gene
QAP07_RS00965 (QAP07_00965)	-	202425..203837 (+)	1413	WP_286444687.1	mannose-1-phosphate guanylyltransferase/mannose-6-phosphate isomerase	-

Sequence

Protein

• Length: 351 a.a.
• Molecular weight: 39859.81 Da
• Isoelectric Point: 8.5786

>NTDB_id=817268 QAP07_RS00940 WP_286445125.1 198319..199374(+) (comB6) [Helicobacter pylori strain BS31]
MKNDAYEIILSWFITPLTAILGRFAEFFLYTLHAQLVFNSVVALAFMFFAYRSLKEQNFFSASALLEALLFVGFFALFNY
ALKNPMHFYEFFQNAIFIAPNMITQSLSQSLSNFSNHALSLDFIFNHGFYALSFISDLSHNEMSVWLFLSILQGLFLSVL
FAIIILVYLEVHVWCSLGVLFLAFGFFKTWRSVVVACLKKCFALGFYKPFLLLVGFLNVSVTKALIDAHMQEKQDLSLLL
VVALFLCCVFIIGVPFFINALFRVQNSLKETYKLATNLSANLSQNALNSLQYITTPPASSSVSSSMNESVSKEKETHSPT
FKVETTQLDVKIPNFKQKKVKKDTINTKNEI

Nucleotide

• Length: 1056 bp

>NTDB_id=817268 QAP07_RS00940 WP_286445125.1 198319..199374(+) (comB6) [Helicobacter pylori strain BS31]
ATGAAAAATGACGCTTATGAGATTATTCTTTCTTGGTTTATCACGCCTCTCACGGCGATTTTAGGGCGTTTCGCTGAATT
TTTTCTCTACACTTTGCATGCGCAATTGGTGTTTAATAGCGTGGTCGCTTTGGCGTTCATGTTCTTTGCTTATAGGAGTT
TGAAAGAACAGAATTTCTTCAGCGCTAGCGCGCTTTTAGAAGCGTTATTATTTGTGGGGTTTTTTGCGCTTTTCAACTAC
GCTTTAAAAAATCCCATGCATTTTTATGAATTTTTCCAAAACGCTATTTTTATTGCGCCCAACATGATCACGCAAAGCCT
CTCTCAAAGCTTGAGTAACTTTTCTAACCACGCGCTTTCTTTAGATTTTATCTTTAATCATGGTTTTTATGCCCTTAGTT
TTATCAGCGATTTGAGCCATAATGAAATGTCTGTGTGGCTTTTTTTAAGCATTTTGCAAGGGCTTTTTTTGAGCGTGCTG
TTTGCGATCATCATTTTAGTGTATTTAGAAGTGCATGTGTGGTGTTCTTTAGGGGTGCTGTTTTTAGCGTTTGGGTTTTT
TAAAACCTGGAGGAGCGTTGTGGTTGCGTGCCTAAAAAAATGCTTCGCTCTTGGGTTTTACAAGCCTTTTTTGTTGTTGG
TGGGGTTTTTGAATGTGTCGGTTACTAAGGCTTTAATAGACGCGCATATGCAAGAAAAACAAGACTTAAGCCTTTTATTG
GTGGTAGCGTTATTTTTGTGTTGCGTTTTTATCATAGGCGTTCCTTTTTTCATCAACGCTTTGTTTAGGGTGCAAAACAG
CCTTAAAGAAACTTACAAACTCGCCACCAATTTGAGCGCTAACCTCAGCCAAAACGCCCTTAATTCCTTACAATACATCA
CGACTCCACCCGCTTCTTCTAGCGTTTCTTCTTCTATGAACGAAAGCGTCTCTAAAGAAAAAGAAACGCATTCCCCCACA
TTTAAGGTAGAAACCACTCAATTAGATGTAAAAATCCCAAATTTCAAGCAAAAAAAGGTTAAAAAGGATACAATAAATAC
AAAAAATGAAATTTAA

Domains

Predicted by InterproScan.

• TrbL/VirB6 plasmid conjugal transfer protein (TrbL) (44-254)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
comB6	Helicobacter pylori 26695	98.006	100	0.98